| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1087 |
|---|
| Symbol | |
|---|
| ID | 3707076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 1192577 |
|---|
| End bp | 1193626 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637737589 |
|---|
| Product | peptidase M42 |
|---|
| Protein accession | YP_343122 |
|---|
| Protein GI | 77164597 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1363] Cellulase M and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCGA TGAGTTATGA ACGGCTATTT GCGCAGATAG AAGATCTGGT CTTGCGCCAT
TCTCCCAGTG GGGCCGAGCA AGAAATAGAT GGATGGTTGT TAGAACGTTT CACGGCGTTA
GGGCAGACTG TCTGGCAAGA TGCCGCGGGC AACATTGTTG TGAAAGTTAG GGGGAAAAAT
CCCGGGGCAA TCGCGATTAC CGCCCATAAG GATGAAATTG GCGCAATCGT GAAAACTAGT
AATAGCCAAG GGCAAGTGGA GGTGCGGAAG CTAGGCGGCG CTTTCCCCTG GGTCTACGGA
GAAGGGGTAG TGGATTTGTT AGGCGACCAT GCCTGCATTA GCGGTATTCT TTCGTTTGGT
TCCCGCCATG TTTCCCATGA GAGCCCGCAG AAAGTCCAGC AAGATCAGGC GCCACTGCAA
TGGCAGCATG CCTGGGTGGA AACCAAATGC ACGCAAAAAG AGCTGGAGGC CGCCGGAGTG
CGTTCAGGTA CGCGGATGGT GGTGGGAAAA CACCGCAAGC GCCCCTTCCG CCTTAAGGAT
TACATTGCCA GTTATACGTT GGATAACAAG GCTTCAGTGG CGATTTTGCT GGCATTGGCG
CAGAAGCTTC ATAAACCCTT AGTAGATGTT TATTTGGTGG CCTCTGCCAA GGAAGAAGTG
GGAGCAATAG GAGCGCTTTA CTTTAGCCGG TGTCATTCTC TGGATGCTTT GATTGCTTTG
GAGATATGTC CCTTGGCGCC TGAATATTTC ATCAAAGAAG GCACCGCTCC TGTGCTGCTT
TCCCAGGACG GTTATGGTCT TTACGATGAG GGACTCAATG GACTTATCAG GCAAGCCGCG
GCCCGGCGAG AAATCCCCTT GCAACTGGCG GTGATTAGCG GTTTCGGCAG TGATGGTTCC
ATTGCCATGA AATATGGCCA CGTGCCACGG GCCGCTTGTT TAGGTTTCCC TACCCAAAAC
ACACATGGTT ATGAGATCGC CCATTTAGGC GCCATTGCCC ATTGTATTGA AATACTTTAC
GCCTACTGCA CCCAGACGGA GGAGGGTTAG
|
|---|
| Protein sequence | MDSMSYERLF AQIEDLVLRH SPSGAEQEID GWLLERFTAL GQTVWQDAAG NIVVKVRGKN
PGAIAITAHK DEIGAIVKTS NSQGQVEVRK LGGAFPWVYG EGVVDLLGDH ACISGILSFG
SRHVSHESPQ KVQQDQAPLQ WQHAWVETKC TQKELEAAGV RSGTRMVVGK HRKRPFRLKD
YIASYTLDNK ASVAILLALA QKLHKPLVDV YLVASAKEEV GAIGALYFSR CHSLDALIAL
EICPLAPEYF IKEGTAPVLL SQDGYGLYDE GLNGLIRQAA ARREIPLQLA VISGFGSDGS
IAMKYGHVPR AACLGFPTQN THGYEIAHLG AIAHCIEILY AYCTQTEEG
|
|---|
| |