Gene Noc_1063 details

Gene Information

• Locus tag: Noc_1063
• ID: 3707246
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 1169176
• End bp: 1172565
• Gene Length: 3390 bp
• Protein Length: 1129 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637737568
• Product: TPR repeat-containing protein
• Protein accession: YP_343101
• Protein GI: 77164576
• COG category: [R] General function prediction only
• COG ID: [COG0457] FOG: TPR repeat

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.194908
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCTTAA GATTTTCTGT GCTAGGGATA GCGCTTTTTG TTTTTGGGTT TTCCTGGGTA 
GGGGCGGATG AGCGTTGCGC CTCGCCGGTG GCGCAAATTG TTTCCCTCCA GGGGCGGGTG 
GAGGTCACTC CAGTGGACGA AAGGCGTTGG CGATCGGTGG GGTTGCGAGA GAAATTTTGC 
GCCGGAGACA GGATTCGCAT CGAGGCTTAT AGTCGTGCCT TGGTGCAGCT TCAAGATAAT 
ACTCTCCTGC ACCTGGATGG GGGTACCCTA GTGACTTTTT CAGGCATTGA ACCTAACAAG 
CCTTCCTGGT TTGAACTCCT GAAGGGCGCT ATCCACTTAA TCAGCCGTTT TCCCCATCGG 
CTGGAAGTCA AAACGCCCTT TGTGAATGCG GCGGTGGAAG GCACTGAATT TGCGATTCGG 
GTAGAACCGG AAAAAGCCTT GCTCTGGGTC TTCGAGGGGC GGGTCCTTTT TCACAATCCT 
ACTGGCCAGC TCACCGTCAC CAGCGGCGAG GCGGCGGTGG CCGAGGCCGG CCAAGCGCCG 
CGGCGGCGGC TGGTGATCCA ACCCCGGGAA GCAGTGCAAT GGGCGCTCTA TTATCCGCCG 
CTCATTGATC TGCGTCCCAG CGTTTATCCA AGCGGTCCAG AAGCCCAAGG AATTCACGTG 
GCGTTGCGGG CCTATCGGGA TGGGGATTTG CTCACCGCCC TGGGCCGCTT GGAACAGGTT 
CCGATTGGAG CGCGAGAGGC CAGCTATTTC ACTTTGCAGG CGGCCTTGCT CCTAGTGGTG 
GGGCGCATCG ATGAAGCCCG CCCCAACATT CAGCGTGCTT TGCAGCTCGA TCCCGACCAC 
GGAACCGCTT ATGCCCTGCA AGCCATCATC GCCCTGGCGC AGAACCGAAA AGAGGACGCC 
CTTCGGTTGG CCCGGCAGGG GGCTAAGCTC GATCCCCAGT CCTCCATTCC TCAAATCGCC 
CTGTCCTATG TTTATCAGGG AAGGTTTAAT ATCGAGCAAG CGTTACAACA TGCCCAGCAG 
GCTACCGAGC TTTTCCCTGG CGAGGCCCTT GCCTGGGCGA GGGTAGCGGA ATTACAACTC 
TCCCTGGGTG ATTTGGATGG AGCCGCCAAA GCCGCCCAAC AGGCGGTAGC CCTCGACCCG 
GATTTAGCTC GGACCCAAAC CGTGCGGGGC TTTGCCGAGT TGACGGCCAT TGATATTGAG 
GAAGCCAAAG CGAGTTTTCA GCGGGCCATT GAACTGGACC CCGCCGATCC CCTCTCCCGC 
CTTGGGTTGG GACTGGCCAA AATCCGCCAG GGGGATCTCA AGGCAGGCAC TGAGGAAATC 
GAAATTGCCG CCAGCCTGGA CCCCAATAAT TCGCTGATTA GAAGTTATCT CGGCAAAGCC 
TATTACGACC AGAAACGGGG AGAGGCGGCC GCAACGGAGC TGGCGATAGC CAAGGAACTC 
GATCCTAACG ATCCCACCCC CTGGTTCTAC GACGCCATTC GCAAGCAAAC GACGAATAGG 
CCGGTGGAAG CCTTGCATGA CATGCAAAAG GCCATTGAAC TGAATGATAA CCGGGCGGTG 
TACCGCTCGC GATTACTTAT GGACCAAGAT CTGGCCGCAA GAAGTGCGAG TCTCGGACGC 
ATTTACAACG ATTTGGGCTT TCAGCAACGG GGCCTATTGG AGGGATGGAA ATCGGTTAAC 
ACTGATCCCA GCAACTACTC CGCCCATCGG CTATTGGCGG ACAACTATGC GGCATTACCA 
AGGCATGAAA TTGCCAGGGT AAGTGAGTTA TTGCAATCCC AACTTTTGCA ACCGCTTAAC 
CTCACGCCCG TGCAGCCAAG CTTGGCAGAA AGTAATCTGC TTCTTTTAGA AGGTGCCGGT 
CCTTCAGGGC TTGCGTTTAA TGAGTTTAAC CCATTGTTCA CGCGCAATCG CCTAGCCTTG 
CAGGCATCCG GTGTTTTTGG CAGCAATGAT ACCTTGGGTG ATGAGGTGAC TCAGTCGGGG 
CTGTGGAAAA ATTTCTCTTA TAGTGTGGGA CAGTTTCATT CTGAAACGGA CGGATTTCGG 
GAAAATAGCG ACTTTGCGCG AAACACTTAT AATGTATTTA CTCAAGGGGC TTTATCTCCT 
AATACAAACT TGCAAGCGGA ATTTAGACAT GATGAGCGCA TACAAGGAGA TTTAGCTCTT 
AGATTTGATC CAAATTTTTC CAAAGTTCTT CGCGAAACCA GTCGTGTCAA CACATACAGA 
TTAGGAGCGC GGCATGCTTT TTCGCCTAAC TCGCAGATTA TAGCTTCATT AAGTTATCAA 
AACGTTAATG TTAAGCAAAA AACACAAACC CAAAGAACCA TTTCCATTCC TACCCCACTT 
GGCCCGTTAG AAACAGAAAT TCTGATTCCT ACAGAAGCTA CGATTAATAG AAATGGATTT 
ATAGGCGAAT TACAACATTT CTATACTAAT GAAAAAGCCA CGGTAATTTC TGGTTTCGGT 
CATATTAACA ATGATGTTAT TCAAAATGTC ACTTTTCCTG AGAATAAACC GCCTTTGACT 
GAAGTTATTA CCCACCCAGA TATAAGAAAA GTTAACATTT ATAATTATTC TCAGATCCGT 
GCTTTTGATA AGTTAACTGC AATACTGGGG TTAAGCATAG ATTCTTTGGA AATAAGAGGT 
CAACTCGATA AAACTCAAGT GAACCCAAAA TTCGGTCTAA TTTGGATGCT GCATTCTTCA 
ACGACTCTTC GGCTGGCAGG GTTTAGAAGC ATGAGTACCA CAAGAACTGC TAATCAGACT 
ATTGAGCAGA CACAGGTTGC TGGTTTTAAT CAATTTTTCG ATGATGTAAA TGGGACCGAT 
GCTTGGCGTT ACGGGGCTGC GGTTGATCAT GTTTTTTCTA AATATTTTTA TGGAGGAGTT 
GAGTATTCAG AACGAAAATT AGATGTTCCG GTACTTATCT CCCAAGGTTC AAAGGCGCAA 
TTCGTTAATT GGAAAGAAAA GACATCACGA ACCTATTTTT ATCTAACGCC AAATTCTAAT 
TTTGCGGCAA GTATCGAATA TTTTTTTGAG CGTTTTGACC GGCGCTCTAA TCCGTTACGG 
ACTGGAATTG TTGATGTGGC AACACATCGG GTTCCAGTAG GCTTAAGTTT TTTTCATCCT 
TTAGGTTTTT CGGCTAACCT CAAGGCCACC TATGTTAATC AATCCGGATT TTTCCAAAGA 
CGTAATTCGG ATGATATATT TAATGATCAG AGCGGGTTTA TCGTTGTTGA TATGAGCTTG 
AACTATAGAT TGCCGAAAAG ATTTGGAATT ATTAGAGTAG GCTCAAAAAA TTTATTTAAT 
GAGAGATTTA AATATCAAGA CATGGATCCA AATATGCCAT TGTTTTTTCC GGAGCGATTT 
TTGTACACAC AATTGACTTT GGCATTCTAA 

 

Protein sequence

MRLRFSVLGI ALFVFGFSWV GADERCASPV AQIVSLQGRV EVTPVDERRW RSVGLREKFC 
AGDRIRIEAY SRALVQLQDN TLLHLDGGTL VTFSGIEPNK PSWFELLKGA IHLISRFPHR 
LEVKTPFVNA AVEGTEFAIR VEPEKALLWV FEGRVLFHNP TGQLTVTSGE AAVAEAGQAP 
RRRLVIQPRE AVQWALYYPP LIDLRPSVYP SGPEAQGIHV ALRAYRDGDL LTALGRLEQV 
PIGAREASYF TLQAALLLVV GRIDEARPNI QRALQLDPDH GTAYALQAII ALAQNRKEDA 
LRLARQGAKL DPQSSIPQIA LSYVYQGRFN IEQALQHAQQ ATELFPGEAL AWARVAELQL 
SLGDLDGAAK AAQQAVALDP DLARTQTVRG FAELTAIDIE EAKASFQRAI ELDPADPLSR 
LGLGLAKIRQ GDLKAGTEEI EIAASLDPNN SLIRSYLGKA YYDQKRGEAA ATELAIAKEL 
DPNDPTPWFY DAIRKQTTNR PVEALHDMQK AIELNDNRAV YRSRLLMDQD LAARSASLGR 
IYNDLGFQQR GLLEGWKSVN TDPSNYSAHR LLADNYAALP RHEIARVSEL LQSQLLQPLN 
LTPVQPSLAE SNLLLLEGAG PSGLAFNEFN PLFTRNRLAL QASGVFGSND TLGDEVTQSG 
LWKNFSYSVG QFHSETDGFR ENSDFARNTY NVFTQGALSP NTNLQAEFRH DERIQGDLAL 
RFDPNFSKVL RETSRVNTYR LGARHAFSPN SQIIASLSYQ NVNVKQKTQT QRTISIPTPL 
GPLETEILIP TEATINRNGF IGELQHFYTN EKATVISGFG HINNDVIQNV TFPENKPPLT 
EVITHPDIRK VNIYNYSQIR AFDKLTAILG LSIDSLEIRG QLDKTQVNPK FGLIWMLHSS 
TTLRLAGFRS MSTTRTANQT IEQTQVAGFN QFFDDVNGTD AWRYGAAVDH VFSKYFYGGV 
EYSERKLDVP VLISQGSKAQ FVNWKEKTSR TYFYLTPNSN FAASIEYFFE RFDRRSNPLR 
TGIVDVATHR VPVGLSFFHP LGFSANLKAT YVNQSGFFQR RNSDDIFNDQ SGFIVVDMSL 
NYRLPKRFGI IRVGSKNLFN ERFKYQDMDP NMPLFFPERF LYTQLTLAF