| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1030 |
|---|
| Symbol | |
|---|
| ID | 3707252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 1140356 |
|---|
| End bp | 1141582 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637737535 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_343068 |
|---|
| Protein GI | 77164543 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCCCCC GTTTGAGAAA ACGACTAGTC AAGTCAATTA GAAACCGGGC TCGAGTGAGG
TCGTCGGCGT CACGAAAAGC GGCGTCTCTG CCACGCCGAG AGGTAGGTGT CCGTGCCTAT
GAGCGCGGTG CGCGATCCAG GCTGCAAAAA TTTCGGCAAG GAACGGCTTT AGCCGTTGCG
TTGACCGCAG CGCTACTACT GCTGTTCGGC GGTATGGATG AAACGGCGGG TCAAGAGCCG
AATAATACCA CGGTGATTTC CGCGCTTGAT AGCCCTGCGG TTAAACAGCC CATCAAGGCC
GATCCCGAAG CCTCGTTGGA GGAAGCGACC ACGACTATCC GTGATCTGCT AAGCGGTTTT
TATGGGTTGC TGCCAAAAAT TCTAATTGCC CTGCTCTTCC TGGTGGCAGC CTGGCTGTTA
GGAAAAGCCT TGCGGGTGAT TACCCACAGA TTGCTGCGGG GATGGGAACG AAGTGAGGCG
ATTGCCGCCC TGGTGCGCAT CGCTCTCTTT TTAGTAGCCA TTGGAGCGGG CCTCAGCGTT
ATTGCAGGTG ATGCGAGAGC CTTGGTGGGA TCAGTGGGGC TGGCTGGGCT GGCGCTCTCA
TGGGCGTTGC AAACGCCCAT CGAAAGCTTT ACTGGCTGGG TGCTTAATGC CTTGCGAGAC
TATTATCGGC CTGGGGACCG TATTGCAGTG GGTGAGGTTT TTGGCGATGT ATACCGCATT
GACATTTTGA CAACGACGGT TTGGGAAGCA GGCGGATCTG GCAAGCACGT GGCGGGCGCG
CAACCGACGG GAGCTTTTAT TACCTTTCCG AATTGGGAAA TTCTCCGCTC CAATATTATC
AATTACAGTC GGGACTTTCC CTATGTGTGG GATGAAGTCG TGTTCGGGAT TGCCAATGAA
AGCGATCTCG CCTACACCGT CGAGATCTTT CGGCGCGTTG CCGGAGAAGT GGTTGGACCG
ATGATGCGTC AACCTATCGC CGAGTATCGG CGCTTGTTAG AGCGCGAGCG GCTAGCGTTC
GATGTGGAAG CCGAGCCGCA GGTGTATCTC TCCTTGGCAG AGGCATGGAC CAACTGCACC
ATCCGTTATC TGGTGCCGGT TCGGCAGCGG CGGCGATGGG CGAGCGAGTT AATTCTAGCA
CTCTCCATTG AGATGATACG CCCCGAACAC AAGGATCGCA TCATAGGAGG GTATCCCCGT
AGGGAAATCG ATTTACTCGA CAATTAG
|
|---|
| Protein sequence | MPPRLRKRLV KSIRNRARVR SSASRKAASL PRREVGVRAY ERGARSRLQK FRQGTALAVA
LTAALLLLFG GMDETAGQEP NNTTVISALD SPAVKQPIKA DPEASLEEAT TTIRDLLSGF
YGLLPKILIA LLFLVAAWLL GKALRVITHR LLRGWERSEA IAALVRIALF LVAIGAGLSV
IAGDARALVG SVGLAGLALS WALQTPIESF TGWVLNALRD YYRPGDRIAV GEVFGDVYRI
DILTTTVWEA GGSGKHVAGA QPTGAFITFP NWEILRSNII NYSRDFPYVW DEVVFGIANE
SDLAYTVEIF RRVAGEVVGP MMRQPIAEYR RLLERERLAF DVEAEPQVYL SLAEAWTNCT
IRYLVPVRQR RRWASELILA LSIEMIRPEH KDRIIGGYPR REIDLLDN
|
|---|
| |