| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0988 |
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| Symbol | |
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| ID | 3707380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 1091772 |
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| End bp | 1095212 |
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| Gene Length | 3441 bp |
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| Protein Length | 1146 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637737494 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_343027 |
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| Protein GI | 77164502 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.181635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAATC CGTCTATCCC GGATGCCGAT GCCCGGCGGC AGGCCCTCAA TCCCCATGGC
TCCTTTATTG TGCAAGCGCC CGCCGGTTCA GGTAAAACAG AACTCCTAAC CCAGCGTTAC
TTGATGCTGC TGGCGCGGGT GGAAGCGCCG GAGGAGATCG TCGCTATTAC TTTTACCCGC
AAAGCGGCTG CGGAGATGCG CTACCGGATC ATAGCGGCCC TTGCCAGTGC CAAGGAGAAC
CAGCCGCCAA AAACTGAACC AGCCAAAACC ACTTGGGATC TGGCTTGCGC GGTGCGGCGC
CGCGATGAAG GGAAGGGATG GTCACTTGAG GACCATCCTG CCCGTTTGCG CATTCAGACT
ATTGATTCTC TCTGCGCCAG TTTAACCCGG CAGATGCCCC TTTTATCCCG CTTTGGCGCC
CAGCCCGGAA TTACCGAAGA TGCGGAGAGG CTCTATCGCC AGGCTGCGCA CAGGACTTTG
GCAGAGGTGG AAAGTGGCGC GGAATGGTCC GCTAGCGTGG AAACCTTGCT CCGCCATTTG
AATAATAATT GGGGAAAAAT CGAACGGCTG CTTTCGGCAA TGCTTGCCCG GCGGGATCAA
TGGTTGCGCC ATCTCGCTGG CGATGAACAA TTGCAGCGAG AAATTTTGGA AGAAGCGCTC
CAGGGGGTTA TCCAGGACGG ATTGAAGCGG GCTAGCCGTT ATTGTCCCGA GTCGATGCTG
GCAGAAATAT TGGAGCTTGC CCGTTTCGCT GCTAGTAATG TTGCCGCTAC TGCTCCAGCC
TCTCCTATTC AGGCTTGTCG AGATCTCTGG AATTGGCCTG GAATCCAGGC CGAGGCATTA
CCCCATTGGC TAGGGCTAGC CCAGCTTTTG TTGACGGATG AGGGCGAATG GCGCCAGCAA
GCAAATAAAA ATATTGGTTT TCCCGCCCCT AGCGCTGCCC GCGGCCAGGA GGAGAGGCAA
TTTCTCAAGG AACAAAAACG CGCCTTGTTA GATTGTCTTG CACGTTTGGA AGGAGAAGAA
GCGTTGCGCC GTGCGCTGCA TGGTCTGCGT TTCCTGCCCT CGGCCTCTTA CACGGCAGCT
CAGTGGCAGT TGATGGAGGC TCTATTTCAA CTCTTGCCCT TGGCGGTAGC TCAATTGCAA
TTGGTATTTC AAGAGCAAGG TGAAGTGGAT TTTACCGAGG TGGCTCAGCG GGCAGTAGTC
GCCTTGGGGG AGGCTGAGGC GCCCACGGAT TTAGCCTTGG CCTTAGATTA CCAGATTCGG
CATTTGCTGA TGGATGAGTT TCAGGATACC AGTCTCAGTC AGTATATCTT ATTGGAAAGG
TTAACTCTTG GCTGGGAAGC GGGTGAGGGG CGGACTTTAT TGGTGGTTGG CGATCCCATG
CAGTCTATTT ATCGCTTCCG AGAGGCTGAA GTGGGACTCT ATTTGCAGGC TTGGTGGCAA
GGAGTGGGGC TGTTGCCCCT GACGCCGTTA ACCTTATCGG TGAACTTTCG CTCTCAGCAA
GGCATTGTGG ATTGGGTTAA TCAGTCTTTT CGCCAGATTT TGCCGGTAGC CCAGGAAATA
GCAACTGGCG CCGTCCCTTA TAGTCAGTCC CATGCCTTTC ATCCCCCTTT AATGGCACCG
GCAGTCCAGA TTCATCCCTT TTTTGAAAAA GGCTCGCTAG CAGAAGCAAA AAGGGTGGTC
CATCTGGTCC AGCAAACCAG ACAGGCGGCG CCAAATTCTA CTATTGCCAT CCTGGTACGC
AGTCGGGGGC ATCTAGCCGG GATTGTACCT CTGCTGAGAG AGGCGGGAGT GGGTTTCCGG
GCCTTGGAGA TTGAGCCCTT GGGCAGTCGT CCGATCGTGC AAGATTTACT GGCTTTGACC
AAGGCCCTGT TTCATCTGGG GGATCGTCTT AGTTGGCTAA CGGTGTTGCG CGCTCCTTGG
TGCGGTTTAA CCTTGGCGGA TCTCTATGTT CTGGCAGGTG AAGATAAGCA GGCAGCCGTT
TGGGACCGTA TCCAGGAAGA TGCTTGTATT CAGGGGCTGA GCGAAGAGGG CCGGGAGCGG
CTTGGCAGGC TCCGCCAGGT ATTCGCCAAA GCTTTGGGAG AACGCCGGCG GACCTCTCCT
CGCCGGCAGG TGGAAGGAGT ATGGCTGGCT CTTGGTGGAC CCGCCTGTGT GACTGATTCC
ATAGCGCTGG AGGAGGCTTC GGTTTACCTG GATTTGTTAG AGCGGGAGGC GGTAGCGGGT
GAGATTCTTG ATTTCAGAGC CCTGGAGGAG TCAGTAGCGC AGCTCTTTGC CCCACCGGAT
AAGGAGGCGG ATGAGACTTT ACAGATTATG ACGATCCATC GAGCTAAGGG GCTGGAATTC
GATACGGTGA TTGTGCCTGG CCTAGGACGT CCCCCCCGTC ATGAAAGTCA CCAATTACTG
CTTTGGGCGG AGCGCCCAAC TGTCCATTAT CCAACGGGAG ATGATGGCGC CCTCTTGTTA
GCGCCTATTT CCGGGGCGGG CAGATCCCAA GATTCTATCT ATCAGTATAT TAAAAGGCTC
CATGAAGAAA AGGGGGAATT CGAAAATGGT CGCCTGCTCT ATGTGGCGGT AACGCGGGCA
AAACACCGGT TGCATCTGTT TGGGCAGGTG GATCTGGATG ACACAGGCAA ACCCAAGGTG
CCCTCAAAGC ATTCTCTTTT GGCTTCTTTG TGGCCTGCGG TAAAAGGAAA ATTCGAAGCA
ACGGCTCTTC TCCAAAGAGA AACCGAGAAT CGGGAAGAAG GAAGAGACCC AGGGGATTCT
TCAATCTCTG GCTTTATTTC CCGGCTAAGC ACCCAATGGC AATGTCCCGC CCCTATAGCA
GGAGTTAAAG CGGATATCGA AGTTTTGCCG GAGGCAGCTT CTGCCTTGGA TCCCATTGAA
TTTGATTGGG CGGGAGAGAC CGCTCGTCAT ATAGGGACGG TAGTTCACCG CTATCTTCAA
ATCATTGCCG GGGAAGGCCC CGAGCACTGG AGCTTGGCTC GGATCACCGC GCTTGCGCCC
GCCTTGCGCC AGGCGCTGAT GCAACAGGGG GTAATGCCTA ACGAGATGGA GAATGCCATA
GAACGCGCCC GGGAAGTACT CAGGCAGACT CTCGAAGATC CGCGAGGGCG TTGGATTCTT
GCTTCGAACT ACCGGCAGGC GCGGAATGAA TATTCTTTGA GCGGTGTTTT AAACGGTCGA
ATTATCCGGG CGGTTATTGA TCGCACCTTT ATTGATGAGG CAGGAGTTCG GTGGATTGTG
GATTATAAAA CCGGCGTCCA TGAAGGTGGT GGTAGGGAGG AATTTCTCAA TAGAGAACAG
GAGCGCTATC ACCCTCAGCT GGAGCGTTAT GCTGCTCTGA TGGCGCTTAA AGTACCTGGG
ACGGAGAAAA TACGATTGGG GCTTTATTAT CCTCAGATAG GCGGTTGGCG AGAGTGGGAG
TGGTCTAAAA AAATCTTTTA A
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| Protein sequence | MINPSIPDAD ARRQALNPHG SFIVQAPAGS GKTELLTQRY LMLLARVEAP EEIVAITFTR
KAAAEMRYRI IAALASAKEN QPPKTEPAKT TWDLACAVRR RDEGKGWSLE DHPARLRIQT
IDSLCASLTR QMPLLSRFGA QPGITEDAER LYRQAAHRTL AEVESGAEWS ASVETLLRHL
NNNWGKIERL LSAMLARRDQ WLRHLAGDEQ LQREILEEAL QGVIQDGLKR ASRYCPESML
AEILELARFA ASNVAATAPA SPIQACRDLW NWPGIQAEAL PHWLGLAQLL LTDEGEWRQQ
ANKNIGFPAP SAARGQEERQ FLKEQKRALL DCLARLEGEE ALRRALHGLR FLPSASYTAA
QWQLMEALFQ LLPLAVAQLQ LVFQEQGEVD FTEVAQRAVV ALGEAEAPTD LALALDYQIR
HLLMDEFQDT SLSQYILLER LTLGWEAGEG RTLLVVGDPM QSIYRFREAE VGLYLQAWWQ
GVGLLPLTPL TLSVNFRSQQ GIVDWVNQSF RQILPVAQEI ATGAVPYSQS HAFHPPLMAP
AVQIHPFFEK GSLAEAKRVV HLVQQTRQAA PNSTIAILVR SRGHLAGIVP LLREAGVGFR
ALEIEPLGSR PIVQDLLALT KALFHLGDRL SWLTVLRAPW CGLTLADLYV LAGEDKQAAV
WDRIQEDACI QGLSEEGRER LGRLRQVFAK ALGERRRTSP RRQVEGVWLA LGGPACVTDS
IALEEASVYL DLLEREAVAG EILDFRALEE SVAQLFAPPD KEADETLQIM TIHRAKGLEF
DTVIVPGLGR PPRHESHQLL LWAERPTVHY PTGDDGALLL APISGAGRSQ DSIYQYIKRL
HEEKGEFENG RLLYVAVTRA KHRLHLFGQV DLDDTGKPKV PSKHSLLASL WPAVKGKFEA
TALLQRETEN REEGRDPGDS SISGFISRLS TQWQCPAPIA GVKADIEVLP EAASALDPIE
FDWAGETARH IGTVVHRYLQ IIAGEGPEHW SLARITALAP ALRQALMQQG VMPNEMENAI
ERAREVLRQT LEDPRGRWIL ASNYRQARNE YSLSGVLNGR IIRAVIDRTF IDEAGVRWIV
DYKTGVHEGG GREEFLNREQ ERYHPQLERY AALMALKVPG TEKIRLGLYY PQIGGWREWE
WSKKIF
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