Gene Noc_0962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0962 
Symbol 
ID3707373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp1062652 
End bp1063617 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content50% 
IMG OID637737470 
Producthistone deacetylase superfamily protein 
Protein accessionYP_343003 
Protein GI77164478 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.109144 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAAA ATGTTTGCGT TTATATGGGA GAATTATTGC AGCGTTATAA TTTTGGTGAA 
AGGCATCCTT TTGGCCCCCG CCGACAGGCC GCCTTTATGG ATGAATTCTA TCATCAGGAG
CTTGATCAAA AAGTCGTGAT GGAGAAGCCG ATTATCGCTG CTCAAGAACA AATTGAATGG
TTTCATCTCC CTGACTATGT TGAAAGAGTT AAGCACTCTT CCATAGCAGG GAGAGGCTTT
CTGGATTATG GGGATACGCC TGCTTTTCCA GGTGTTTATG AAGCAGCTGC GGCGGTTGTG
GGAACCGTGC TAAAGGCAGT GGATGGCATG ATGACCGGAT CTTGCCGGCG AGCTTTTATT
CCAATTGCTG GTTTGCATCA CGCCCGCCGC GAAGCTGCCG CTGGTTTTTG CGTCTTTAAT
GACTGCGGCG TGGCCATTGA AGCGTTACGG CGGCAGTATG GGGTGCAGCG AATAGGATAT
GTGGATATCG ATGCCCATCA TGGAGATGGG GTGTTTTACG GCTTTGAGGA AGACCCGAAT
GTGATTATTG TTGATCTCCA TGAAGATGGC CGTTATCTAT ATCCTGGAAC GGGATCTAAG
GATGAAACGG GCACTGGCCC TGCCGTAGGC AGCAAGCTAA ATATTCCTAT GCCGCCAGGG
GCCACGGATA AGAAATTTTT AGAATCTTGG GAACAAGCAG AGGCATTTCT AAAACGGGGC
CAGCCAGAAT TCATTTTGTT TCAGTGCGGT GCGGATAGTT TGGCGGGCGA TCCGCTTACT
CACCTTGGAT ATAGCCCTAC AGCCCATGCA CATGCCGCAA AGCGCTTATG TGCCATCGCG
GAACAATATA GCTCGGGGCG CATCCTTGGC TTAGGGGGAG GAGGGTATGA TTTGGATAAC
CTCGCTAAGG CGTGGTGTGC GGTCGTGCAG GCGTTTGTTA CAGCAGATGT TTTCCTATCT
GATTAA
 
Protein sequence
MNKNVCVYMG ELLQRYNFGE RHPFGPRRQA AFMDEFYHQE LDQKVVMEKP IIAAQEQIEW 
FHLPDYVERV KHSSIAGRGF LDYGDTPAFP GVYEAAAAVV GTVLKAVDGM MTGSCRRAFI
PIAGLHHARR EAAAGFCVFN DCGVAIEALR RQYGVQRIGY VDIDAHHGDG VFYGFEEDPN
VIIVDLHEDG RYLYPGTGSK DETGTGPAVG SKLNIPMPPG ATDKKFLESW EQAEAFLKRG
QPEFILFQCG ADSLAGDPLT HLGYSPTAHA HAAKRLCAIA EQYSSGRILG LGGGGYDLDN
LAKAWCAVVQ AFVTADVFLS D