| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0856 |
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| Symbol | truD |
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| ID | 3707161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 936678 |
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| End bp | 937754 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637737358 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_342899 |
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| Protein GI | 77164374 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGCGG ATGAGGCTGG GCAGCAAGTG CTTGCCTATG GCGGAGATCC GCCTTTGGCA
ACCGCCCTGC TTCGGTGTCG CCCAGAGGAC TTCCAGGTGG TTGAGGAACT TCCCTTCGCT
CTCTCTGGGG AGGGCGAGCA TGTCTGGCTT CTGCTTTGTA AACGTAACAC TAATACTGTC
TGGCTAGCGC GCCAGCTTGC CCGCATTGCC GGAGTGCGGC TAGTAGATGT GGGTTACGCA
GGGCTAAAGG ATCGTCATGG GCTGACCACC CAATGGTTTA GCGTTAATTT GAGTGGAAAA
AAAGAGCCAG CCTGGGCTAC AGCGTTGGAG TCTGCCACGG TTCAAGTGCT TAAGGTTATC
CGCCATTCCC GAAAATTACA GCGGGGCGCG CTCAAGGGAA ACCGTTTTCT ATTGACCTTG
CGCCACTTCC AGGGTGATCG GGAGGTTGTT TGCGACCGCC TGACACAGAT TAAAGTTGCG
GGGACTCCCA ATTACTTTGG ACCGCAGCGT TTTGGCCGGG GGGGCCAGAA TCTGGATCAG
GTGCACCGTT GGTTTAGTGG AGGCAAGCCA CCCAGGGGGC GTTATTTACG GGGAATGCTG
CTTTCGGCAG CCCGCGCTTT TTTATTTAAT AGGGTCTTGT CGGAGCGCGT CCAGGCAGCT
AATTGGTGGC AACCACTTCC AGGCGAGGCG CTTATTCTGG ATGGCAGCCA TGGCTTTTTT
GTAGCGGAGA CCATAGATGA AGCCTTGCAA GCCCGGGTGA GGCGCTTCGA CTGCCATCCC
AGTGGTCCTT TATGGGGGCG AGGGGAATCT CCCGCTAAGA GGATGAGCCG GGCTCTTGAG
GAAGAGGTAT TGGCGGATTA CGCATTATGG CGGGAAGGTC TGGAGCAGGC AGGCTTAAAG
CAAGAGCGCC GTAGTTTGCG TTTAATGGTA GCTGATTTGG AATGGTCTTT TCCTCCTGCT
ATGGATAGCT TGCAGCTTCA TTTTCGTTTA CCCGCTGGGG CTTATGCCAC CACTGTATTG
CGGGAAGTGG TCAGGACCCA AGAGGCGGTG GGACAGCCTT TCCTTTTAGA TGAATAA
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| Protein sequence | MEADEAGQQV LAYGGDPPLA TALLRCRPED FQVVEELPFA LSGEGEHVWL LLCKRNTNTV
WLARQLARIA GVRLVDVGYA GLKDRHGLTT QWFSVNLSGK KEPAWATALE SATVQVLKVI
RHSRKLQRGA LKGNRFLLTL RHFQGDREVV CDRLTQIKVA GTPNYFGPQR FGRGGQNLDQ
VHRWFSGGKP PRGRYLRGML LSAARAFLFN RVLSERVQAA NWWQPLPGEA LILDGSHGFF
VAETIDEALQ ARVRRFDCHP SGPLWGRGES PAKRMSRALE EEVLADYALW REGLEQAGLK
QERRSLRLMV ADLEWSFPPA MDSLQLHFRL PAGAYATTVL REVVRTQEAV GQPFLLDE
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