Gene Noc_0829 details

Gene Information

• Locus tag: Noc_0829
• ID: 3707134
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 905051
• End bp: 907039
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637737331
• Product: Alpha amylase, catalytic region
• Protein accession: YP_342872
• Protein GI: 77164347
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.673433
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGGGG AAGATGGTAG AAAACGGGCA GTTATCGAAC AGGTTAAACC TGAAATTGAT 
GGCGGCCGCT TTGCCATCAA ACGAACGGTG GGTGAAACTG TGGTGGTGGA GGCGAATGTG 
TTCACCGATG GCCATGATGC GGTGAGCTGC GTTCTGCGGT ACCGTCGAGA AGATATGTCT 
TCTTGGAGTG AGGTGCCCAT GCATCCCTTG GACGGTGATC GCTGGCAGGG GAAGTTTAAA 
GTCACTGCAG TAGGGCGCTA TTACTATACC CTGATTGCCT GGGTAGATCA TTTTAAATCC 
TGGCGGCAAG AGTTAACTAG GCGTATTCAG CCTGAGGATA TTGTTCTTCA GCTTCAGGTG 
GGGGCCCAGT GGCTAGAAGC AGCGTCAGGG CGGGCTGAGG GGGAAGCTTC CCAGAGACTC 
AGAAATCAAG CCAAGCGTTT GGAGGGCACA GACGAGCTTA GTGAAAAATT AACCACCGCC 
CTGGAAGAGG AGACCTCTTT ATTGATGGCC CACTATCCTG ATCGGCGTTT TGCGACCTGC 
TATGATAAAG AATTGATCGT AGTGGTAGAT AGGCCTCGGG CCCGGTTTAG CGCCTGGTAT 
GAAATGTTTC CTCGCGCTTG TGCAACACAA GCCAGCCAGC ATGGTGATTT TAAGAGCTGT 
GAGGCCCGTC TGCCTTACAT CGCCACGATG GGTTTTGATG TGCTCTATCT ACCTCCTATT 
CATCCCATTG GGCGCATTAA TCGCAAGGGC AGGAATAATA CGCTAATAGC TGGCCCCGAG 
GATCCGGGCA GTCCTTGGGC TATTGGGGCA AAAGAGGGGG GGCATAAGTC AATTCACCCC 
CAATTAGGGA CCTTGGAAGA TTTCCGGCGC TTTGTGGCTA AAGCGCGGGA ATTCGGTATT 
GAAGTGGCTT TGGATATCGC TTTTCAATGC GCGCCTGATC ACCCTTATAT TAAGGCGCAC 
CCGGAATGGT TCCGTTGGCG GCCGGATAAC ACCGTGCAAT ATGCAGAGAA CCCGCCTAAA 
AAATATGAGG ATATTTACCC CTTTTATTTT GAGACCGATC AGTGGCAGCC TCTGTGGGAG 
GAACTAAAAA GTGTGTTTCT GTTCTGGATT GAGCAAGGAG TGCATATATT CAGAGTTGAT 
AACCCCCATA CCAAGCCGTT CCTCTTTTGG GAATGGCTGA TTGCAGAAGT GAAAAAAGTC 
CAGCCGGACG CACTTTTTTT GTCTGAAGCT TTTACCCGTC CTAATGTCAT GTACCGACTT 
GCTAAACTGG GTTTCACCCA GTCCTATAAT TATTTCCCTT GGCGGAATAC CAAGCAGGAG 
TTAACAGAGT ATTTTACCGA GCTTACCCAA ACAGAGGTAC GGGAATATTT CCGTCCTAAT 
CTGTGGCCTA ACACACCGGA TATCCTGACG GAATATCTCC AATTTGGAGG GCGGCCAGCT 
TTTATGATCC GTTTGGTTTT AGCAGCTACT TTAGGGGCCA GCTATGGTAT TTATGGGCCT 
GCTTATGAGT TAATGGAAAA TATGCCCCGC AGCTCGGGCA GTGAGGAGTA TCTTAACTCT 
GAGAAATACC AACTTCGGCT TTGGGACATT GGTCGCGACG ATAGCCTCAA GGATTTTATT 
GCCCAAGTGA ACCAAATCCG TAGAAGCCAT CTTGCTTTAC AGTTTGATGG GAACTTGCAT 
TTTTATCCGG TGGATAATGA ACAAATAATT TGTTACGGCA AATGGGCTGC AAATCTGGCT 
GACATCATTT TGGTGGTCGT GAATTTAGAT GTCCATTATA CCCAGTCTGG TTGGGTCGAA 
TTGCCCTTGG AGACCTTGGG GATTGAGCCC CATCTTCCTT ACCAGGTACA TGATTTACTC 
AGCGATACCC ATTACCTGTG GCATGGCCCG CGTAATTACG TAGAACTTAA TCCCGCGCTC 
ATCCCTGCCC ATATTTTCCG CTTGCAGTGC CGGGTACGGA CAGAGCAAGA TTTCGATTCT 
TTTATGTGA 

 

Protein sequence

MQGEDGRKRA VIEQVKPEID GGRFAIKRTV GETVVVEANV FTDGHDAVSC VLRYRREDMS 
SWSEVPMHPL DGDRWQGKFK VTAVGRYYYT LIAWVDHFKS WRQELTRRIQ PEDIVLQLQV 
GAQWLEAASG RAEGEASQRL RNQAKRLEGT DELSEKLTTA LEEETSLLMA HYPDRRFATC 
YDKELIVVVD RPRARFSAWY EMFPRACATQ ASQHGDFKSC EARLPYIATM GFDVLYLPPI 
HPIGRINRKG RNNTLIAGPE DPGSPWAIGA KEGGHKSIHP QLGTLEDFRR FVAKAREFGI 
EVALDIAFQC APDHPYIKAH PEWFRWRPDN TVQYAENPPK KYEDIYPFYF ETDQWQPLWE 
ELKSVFLFWI EQGVHIFRVD NPHTKPFLFW EWLIAEVKKV QPDALFLSEA FTRPNVMYRL 
AKLGFTQSYN YFPWRNTKQE LTEYFTELTQ TEVREYFRPN LWPNTPDILT EYLQFGGRPA 
FMIRLVLAAT LGASYGIYGP AYELMENMPR SSGSEEYLNS EKYQLRLWDI GRDDSLKDFI 
AQVNQIRRSH LALQFDGNLH FYPVDNEQII CYGKWAANLA DIILVVVNLD VHYTQSGWVE 
LPLETLGIEP HLPYQVHDLL SDTHYLWHGP RNYVELNPAL IPAHIFRLQC RVRTEQDFDS 
FM