| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0761 |
|---|
| Symbol | |
|---|
| ID | 3707027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 828393 |
|---|
| End bp | 830894 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637737263 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_342804 |
|---|
| Protein GI | 77164279 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000306489 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGGGAAC AGAAAAAAAG CGGACAGCCC ACATGGGCCT GGTGGATCAT CCTTTTAGGG
GCGGGTGTTC TGGTTGCTTG CGCGACTCAG CCATCTGGCT CCGGGTCGGC TAATGAGCCT
TCCCCCGCTG CCATTTCTGC CTCGGAAGAT GCTCCGTCTG TGGCCAAAAG CGCCAAGATC
GAAGCAACGC CAGCCGCCGA AGAGGAAGAG GTGAAGCCGG AGAGTGATGA AGTCTATCCG
GGAAGTAATC ATTTCATTAA CCGCGAGGCG GCGAGCAAGC CCCGGACTTT CCAGGTGCGG
GAAGGTGCTA TTCTCCTCAA CTTTGAGAAT ACTGATATCC GCGAGGTGGT CAAAACCATA
CTGGGCGATA TTTTGGAGGA AAATTACGTC ATTGATAGAG CGGTGCAGGG AACGGTAACC
GTCCAGACTG GCCGCCCTCT GCCCAAGGAC GCCTTAATGC CGACTCTGGA AACGCTGCTG
CGGCTAAACA ATGCAGCCTT AATCCAGGCC GAGGGATTGA ATAAAATAGT GCCCCTCAAT
CAGGCTGTTC AAGGCAACCT CTCGCCCCGC CTAAGCAGAG CGAAATCTAC TGTGGGCTAC
GACGTGCGGA TCATGCCCCT GGACTATATT GGGGCTGGAG AGATGGAGAA GATTCTTGAG
CCTTTTGTCC CCAAAGATGG GTTAGTCCGG GTCGATCCCG CCCGGAATTT GCTTATCCTG
GCCGGCACGG CAAAAGAGTT GGACCAATGG CAGGAGACCA TCGATATCTT TGATGTCAAT
TGGCTAGAGG GGATGTCCGT TGGTCTCTAT CGGCTAGAGT ATACGGATGC CGAGCTGCTG
GTAAATGAAT TAAATATAGT GATGGGGCCC GAGGCAACAA CCCCCTTGGC GGGTATGTTC
CGTTTTATAC CCATTGAACG TCTCAACGGG ATTTTAGTGG TCACCTCCCA GTCCCAGTAT
CTGAAGGAAG CCAAAACCTG GATAGAGCGG CTGGACCAGG GAGAAGATAC GGAGAGCGAA
CGGCTTTATG TCTATCCGGT TCAGCACGGC CGGGCGGATC ATCTAGCGGC TTTGCTGCAA
TCCGCCTTTG GGCTGGAAGG CGGGGGTGGG ATTTCCTCGG CCCGGGTGGC GCCGGGCCAG
CAGGCAGTGG GATTGTTCTC ATCTTCCCGG GGAGGCAGCG GGGGGTTTGG GTCATCCCGG
GGTGGCGGCT TTGGCGGCGG GGGTTTCGGG TCATCCCGGG GTGGTGGGGG GTTTGGTGGC
GGCACCCTGG GCTCATCACG GGGCGGCGTT GGTTCCTCCC AGATGGGCGG GTTGAGGGGA
TTCAAGGCGT CTCGGGGGGC AGCTCCTGAC GCTTCTCAGG AGGAAGAGCT GCGGGCGTTT
CAGGCGAGTA CCGAAAACGC GACTGAATCC CCCCAGGCAT CTGGCTCCGC GGCCGGGGGT
ATTAAGTTTA CGCTTCCTGG CGCTAAGGAT GATGAGGATA AGAAACCCGA GGTGCGGGTT
ATCCCCGACG TGGAAAATAA TACCTTACTG ATTTCCGCCC CTCCGCCTGT TTACGAAAAA
ATACTGGTAG CCCTCCATCA GTTGGATATT CCTCCCCGCC AGGTGCTAGT GGAGGCTACC
ATTGCAGAAG TGACCCTCAC GGATGATCTG CAATATGGGG TCCGCTGGTT TTTCGAGAAC
ACGGGAGTTA AGGACTACCT TGGCAGGGGT GCTTTGACAG CAGCGATCCC GGGAACGTCA
ACCTTTACCT ATGGGTTGTT CGATGCTGCG GGCGCGGCGC GTATTGTGCT CGATACTTTG
TCTAGTCAAA CCAAGGTAAA GGTGCTCTCC TCGCCCCAAT TGCTGGTTCT GGATAACCAA
ACGGCGGAAA TACGAGTAGG GGACCAGATC CCTATACAAA CAGGTTCAAC CATTGGTATA
GGAGGTAATT CAACCACCCG AATACAGTTC CGGGATACGG GCGTATTGCT GACCGTTACC
CCCCGGGTTA ATGCGGGTGG CCGGGTCACC ATGGAACTTA CCCAGGAAGT GACCGATGTG
GGGGGTACTA AGTTGCCTAC CAGCGCCGCT CCCTCGGGCG ACGGCGATGA TGATAATAAT
AATCAAACGG TAGGCAACAA TCCGACTTTC TTGCAACGAA GTTTCCGGAG TGTGGTGACG
GTGCAAAGCG GCGATACTAT TGTGCTGGGG GGCTTGATCC GGGACAATGA GCGGTTTTCT
GACAGCGGCT TGCCATTTCT TCATAAATTG CCCCTCATCG GCCCTCTTTT CGGCGCTACG
GCAAAAAGCA AGTCGCGCAC CGAGCTGATT GTGTTGATGA CTCCCCGGGT GGTACGTAAT
CAATACGAAG CCCGCCTGGT GACCGAGGAG TTCCGCGAGA AGCTGAGGAA TGCCTCGGAC
GTGGCGGAGG AAATGGGAGG GATCGCCCCT ATAGCTATTC CCCGAAAGGA AAATAAGGAA
AAACCGTCGC CTTCTGCCGA CAAAAATGAC GTGAAACCTT GA
|
|---|
| Protein sequence | MREQKKSGQP TWAWWIILLG AGVLVACATQ PSGSGSANEP SPAAISASED APSVAKSAKI
EATPAAEEEE VKPESDEVYP GSNHFINREA ASKPRTFQVR EGAILLNFEN TDIREVVKTI
LGDILEENYV IDRAVQGTVT VQTGRPLPKD ALMPTLETLL RLNNAALIQA EGLNKIVPLN
QAVQGNLSPR LSRAKSTVGY DVRIMPLDYI GAGEMEKILE PFVPKDGLVR VDPARNLLIL
AGTAKELDQW QETIDIFDVN WLEGMSVGLY RLEYTDAELL VNELNIVMGP EATTPLAGMF
RFIPIERLNG ILVVTSQSQY LKEAKTWIER LDQGEDTESE RLYVYPVQHG RADHLAALLQ
SAFGLEGGGG ISSARVAPGQ QAVGLFSSSR GGSGGFGSSR GGGFGGGGFG SSRGGGGFGG
GTLGSSRGGV GSSQMGGLRG FKASRGAAPD ASQEEELRAF QASTENATES PQASGSAAGG
IKFTLPGAKD DEDKKPEVRV IPDVENNTLL ISAPPPVYEK ILVALHQLDI PPRQVLVEAT
IAEVTLTDDL QYGVRWFFEN TGVKDYLGRG ALTAAIPGTS TFTYGLFDAA GAARIVLDTL
SSQTKVKVLS SPQLLVLDNQ TAEIRVGDQI PIQTGSTIGI GGNSTTRIQF RDTGVLLTVT
PRVNAGGRVT MELTQEVTDV GGTKLPTSAA PSGDGDDDNN NQTVGNNPTF LQRSFRSVVT
VQSGDTIVLG GLIRDNERFS DSGLPFLHKL PLIGPLFGAT AKSKSRTELI VLMTPRVVRN
QYEARLVTEE FREKLRNASD VAEEMGGIAP IAIPRKENKE KPSPSADKND VKP
|
|---|
| |