Gene Noc_0727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0727 
Symbol 
ID3706993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp787541 
End bp788884 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content57% 
IMG OID637737230 
ProductIntegrins alpha chain 
Protein accessionYP_342771 
Protein GI77164246 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000587794 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTGT GGCAAGTATT GAGTGGAAGC ATGGGTATGG TCATGGCTGC TCTGGTTTTT 
GCCGAAGAAG GACCATTGCC CTCTTCTCCG GAGTCTCCTC TGCTCAGTTA TCAGCTGGCG
GTAGAGGGGT TGCCCCCCAG GGCTCCCCTC CCTATCTGGA AAAGTACCCC GGTCATAGTT
GATAGCAATG GGGATGGTTT CTTAGACCTA GCCGCTATCT CCCGGGTGGG TGACGGGGCT
CAGGTGTGGC TCGGGGATGG AAAGGGCCGG TGGCAAGATT CTTCCCAGGG GCTGGGTCCT
GCCGATTCTT GCGGTGGGGG GGTGGCCTTT GGCGATATTA ACCGGGATGG CATGCTTGAT
TTGGCGGTAG CGGATCATTG TGGCGGGGTA TTCGTGTATT TGGGGAACGG TAAAGGGGAG
TGGACAGCCA GCACCGAAAG ACTAAATCCA GCCCTGTCGC ACCAGATAAA TCTGGAAGAG
GAGGGGGAAA ATACCCTGAC CGGGGCTGAG GATTTAGCCC TGGGGGATGT TAATGAGGAT
GGTTTTTTAG ACTTGGTAGT AGCCGCTTCC GATGAAGGCG GATTTGCAGT GTACCTAGGA
GATGGCAGCG GTAAATCCTG GCAAGAAAGT GACGCCGAGG GTCTGCCTAC TGTTAAGCAC
CTAGGACCGG GAGCCGAGGA AAATGGCGGT TGGGCCAACC AGGTGCAGTT ACTGGATATA
GATGGGGATG GGCATTTAGA TGTGGTGGCC AACTATTATT TAGGACCCTG GGTCTGGCGG
GGTAATGGCA AAGGGCAGTG GGAGGATTCT TCGGAAGGAT TGCCCCGGCC TATGATCGGA
GGGCTTTTCC GCGGTCTGGC GGTGGGCGAT ATCAATGAAG ATGGCCGTCT GGATTTGGCG
GTGGCTAACA GCATCAATGG CCCCGAGGTT TTTCTGCAAA CTCAGAAAGG ATCGTGGCAG
CGAACCCCCG ATGTCATGCC CTCCATGCTC GGCGGAGCGG AAGGCATTGC CCTAGGGGAT
TTAGACCGGG ACGGTCATCT GGATTTAGTG GTAGGGGGGC GTTTGGAAAC AAAGGGAACC
GGCTACGGGC TGTTTATCCT GCGGGGTGAC GGCAAGGGTG GCTGGACCAA GCTTCAAGAC
ACGAGTCTTC CCGCCTCCGG GTTGCCCTTT ACCTGGGGTA TCACCACGGC CGATGTGAAT
GGCGATCAGT GGCTGGATTT TGCCGTAGGT ACCGGAGGGG CGGTGGATGG CACCAAAGAT
CCTGTACGGG ATGAGAGCGC CTTGCCCCAG TTACAGGTTT GGTTGCACCA AGCCCCCTCG
CAAGAAGATC AGGCGAGCCA ATAG
 
Protein sequence
MKLWQVLSGS MGMVMAALVF AEEGPLPSSP ESPLLSYQLA VEGLPPRAPL PIWKSTPVIV 
DSNGDGFLDL AAISRVGDGA QVWLGDGKGR WQDSSQGLGP ADSCGGGVAF GDINRDGMLD
LAVADHCGGV FVYLGNGKGE WTASTERLNP ALSHQINLEE EGENTLTGAE DLALGDVNED
GFLDLVVAAS DEGGFAVYLG DGSGKSWQES DAEGLPTVKH LGPGAEENGG WANQVQLLDI
DGDGHLDVVA NYYLGPWVWR GNGKGQWEDS SEGLPRPMIG GLFRGLAVGD INEDGRLDLA
VANSINGPEV FLQTQKGSWQ RTPDVMPSML GGAEGIALGD LDRDGHLDLV VGGRLETKGT
GYGLFILRGD GKGGWTKLQD TSLPASGLPF TWGITTADVN GDQWLDFAVG TGGAVDGTKD
PVRDESALPQ LQVWLHQAPS QEDQASQ