| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0557 |
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| Symbol | |
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| ID | 3706769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 601566 |
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| End bp | 603455 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637737066 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_342607 |
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| Protein GI | 77164082 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.321507 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGCAA ACTGGAATAT CCAACGTTCG CAAGAACTCT ACAATATCAC CCAATGGAGC
GAAGGTTATT TCGATATCAA CGCCCAAGGC CATCTCATCG TTCGCCCTGA AGGCCCAACC
AGCCAAACAC CCATTGATCT CTACCAGGTA AGCCAGGCGC TCCTGGAAGC AGGACTTTCT
TTACCCGTAC TAGTACGTTT TTCCGGAATT CTTCACCATC GCGCTAAAAG CCTGCGAACT
GCTTTTACCA AGGCCATGAC CGCTACCCAT TATCAAGGGT TCTTTAGTGC AGTCTATCCC
ATCAAGGTGA ACCAGCAGCG GCAGGTCATT CAGGAAATTC TGGCCGCGGA TTCTGAACAC
TTGGGGTTAG AAGCGGGAAG TAAGCCCGAA TTATTGGCGG TCATGGCCTT ATCCCGGCCT
GGAGCCCTGG TGATTTGTAA TGGCTACAAA GACCGTGAAT ATATCCGTCT GGCTTTGATG
GGGCGGCAAT TAGGATTACG GATTTATCTG GTGGTGGAAA AACCCTCTGA GCTGGAACAT
ATTATCCACC AAGCCCAAGC TCTAAAGGTA GAGCCGCTGC TAGGGGTACG AGTCCGTCTT
GCTTCTATTG GAAAAGGCAA ATGGCAGAAT ACGGGGGGTG AGAAGGGTAA ATTTGGCCTG
TCTGCCGAAC AAGTCCTCAT GATGATCCAG CGGCTTCGCC AAATCGGCAT GCTCCACTGC
CTTACCCTGC TGCATTTTCA CATGGGCTCC CAACTTCCCA ATATCGCCGA CATCCAGCGG
GGCATCCGGG AAGCTGGGCG CTATTACGCC ACCCTGCGGG AACTGGGTGT TCCTCTGCGC
AGTGTCGATG TGGGCGGGGG GCTTGGCGTA GACTATGATG GCACCCACAC CCGTGGTCTT
TGCTCCACCA ACTATACCCT CCCGGAATAT GCCCATAAAA TAGTTCACGG ATTGTGGGAG
ATTTGCGAAG CCCACCAGCT ACCCCACCCC GAGATTATTA CCGAGGCAGG ACGGGCTATG
GTGGCTCACC ATGCCATTCT TATCAGCAAT ATCATTGACA TCCAACCGGC TCCTGGCAAG
GAAGAACCCC CCGCCCCCGC CGCCGACGAT CCGCCTATCA CCCAGGGGTT ATGGCAGAGC
TATCAAAAGC TTACTCGGCG TTCGGCTATC GAAGCCTATC ATGATGCCAG TCAGGGCATC
GCTGATGCCC TGGATATGTT CAACTACGGG ATTCTGAGTT TGCAACAACG GGCCCAAGCG
GAGCAGCTTT ATTTTTCCCT TTGCCGCCGG ATTCGCTCGT TTCTCAACCC CCAGGTCCGC
GCCCACCGAG AAATTTTGGA CGAACTAGAG GGGAAGCTAA CGGCAAAGGC TTTCTGCAAC
TTTTCCTTAT TTCGCTCCTT GCCTGATGCC TGGGCTATTA ATCAGATCTT TCCCATCATG
CCCTTGCACC GCCTGGAACA GCCACCAACC GAACGGGTGT GGATAGAGGA CCTGACCTGC
GACTCCGATG GACGCATCGA TCTTTACGTC GATGGGGAAG GCATTGAAAC CAGCCTGCCT
TTGCACCCTC TCATTCCCGG TGAATCCTAT TTATTAGGTT TTTTTCTGGT GGGCGCCTAT
CAGGAAATCC TCGGTGATAT TCATAACCTA TTCGGCGCCA CCGATTCCGT TCATGTGGAA
GTCGATAGAC AACAAGGGTT TCGGCTGCGC CATGCCCACA AAGGAGATAC AGTGGAATCG
GTCCTGCAGC AAGTGCGCTT TGATGCCGCC GAAATAAAGG AGCATTTACA GGCCAAACTC
AGTCAGGCAG CCCTTGATGA CCATCAACGC CGCCTCTATC TTCAGGAGCT AGAAGCAGGA
TTGAAAGGAT ACACTTACCT GGAAGACTAG
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| Protein sequence | MPANWNIQRS QELYNITQWS EGYFDINAQG HLIVRPEGPT SQTPIDLYQV SQALLEAGLS
LPVLVRFSGI LHHRAKSLRT AFTKAMTATH YQGFFSAVYP IKVNQQRQVI QEILAADSEH
LGLEAGSKPE LLAVMALSRP GALVICNGYK DREYIRLALM GRQLGLRIYL VVEKPSELEH
IIHQAQALKV EPLLGVRVRL ASIGKGKWQN TGGEKGKFGL SAEQVLMMIQ RLRQIGMLHC
LTLLHFHMGS QLPNIADIQR GIREAGRYYA TLRELGVPLR SVDVGGGLGV DYDGTHTRGL
CSTNYTLPEY AHKIVHGLWE ICEAHQLPHP EIITEAGRAM VAHHAILISN IIDIQPAPGK
EEPPAPAADD PPITQGLWQS YQKLTRRSAI EAYHDASQGI ADALDMFNYG ILSLQQRAQA
EQLYFSLCRR IRSFLNPQVR AHREILDELE GKLTAKAFCN FSLFRSLPDA WAINQIFPIM
PLHRLEQPPT ERVWIEDLTC DSDGRIDLYV DGEGIETSLP LHPLIPGESY LLGFFLVGAY
QEILGDIHNL FGATDSVHVE VDRQQGFRLR HAHKGDTVES VLQQVRFDAA EIKEHLQAKL
SQAALDDHQR RLYLQELEAG LKGYTYLED
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