| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0541 |
|---|
| Symbol | |
|---|
| ID | 3706733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 580106 |
|---|
| End bp | 582262 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637737049 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_342591 |
|---|
| Protein GI | 77164066 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAA GAACGCCCAT TTTCGTCCTC GTAGCTACCG CCTGCGCTGC CTCCCCGTTG
CTTGCCCAGG ATGAAGAGGT GACCTTGCCG GAGCTTGAGG TGGTGGGACA ACCGGTTGAG
CGTGCGGGGG TAGAAGCAGA AAATAAGCCT TTCGCCACGC CTGATACGGC CGATTTGCTG
AGGCGGGTCC CTGGCGCTAA TGTCAATGCG AATGGACCGA TAGCAGGTAT GGTGCAATAC
CGGGGGATGT TTGGGCCGCG AATGAACGTG CGGATAAATG GTACGCCTAT TGAATCAGGA
GGACCTAATT GGATGGACCC GCCACTGAGC TACGCGCCTC GCAGCCTGGT AGAGTCAATA
GAGGTTACCC GGGGGGTTGG GTCGGTCAGT ACGGGTTCTG GAATCGGCGG CTATGTTGAA
GCCAAAACCA AGTCCAGCCA TTTTACCGGC AGCGAGCAAT TTGAATTTCA CAGCGATGTT
GATATAGCAG GCCATTCCGT CGATGGTGGT TATAATTTGG GGGGTATTTT GTCTTTGTCC
AATGATCGTC ATCGGTTACA TTTTCTTGGT AGCCGGGATG ATGGTGGCGA TACTGAATTT
GGCGACGGCA CTATCAAGGC CACCGAGTAC GAACGGAATA CTTATGGCGC TGGGTACGGT
TTTAAAACAG GCGATCATGA ATTTAGCGCT GACTATCAAC GTCTGGATAC CGAGAATAGT
GGCACCCCAA GCCTGCCTAT GGATATTAGC TTCATCAGGA CCAATCGGGC AGGAGGTAAA
TATACGGGGT TTTGGAACGA TATCCAGCTA GAAACCCGGT TCGGCTATTC TGATGTGGAT
CATCAAATGA ATAATTTTAG GTTGCGGCAA GCCGCTAATT TTTGCGCTCT ACCGGCCCCC
TTTTGCCAGG GCGATGATAA ACGTTTGGTG AATGCTGGCA GTGAAGATTT CAACTACGGC
CTTAAGGCCA CCTTCGCCCT CTGGGGTGGC GATCTAGCCA TAGGCGCCGA TGGCCATGCC
GCGCAGCACA ACGCGACTGT CTTGGATCCT GATTTTGCGC CCTTTTTCGT GACTAATTTT
AACAATGCGC AAATAAATAA GTATGGCTTC TTTAGTGAAT GGACCAAGGA GATTTATTCT
AACTGGGAAC TCCAGCTTGG AGCCCGTTAT GATCGGGTAG AGATGGATGC GGATGGGGTC
AACGCCTTTC CCGCTCAGCT TGCCGACAGG GGCATGGGGG GGATGCCGGC GCAGATGATA
CAAATGCTCA GGAATCGATT CAATGGCGCC GATCGTGGGC AAAACAACAA CAATGTGGAC
TGGGTCGCCG AGCTCAGCTA CCAAATGAAT TCCGCTCTTC GCTGGACTTT CGGCGCGGCG
CGGAAGATGC GCTCGCCAAC TTACATTCAA CGTTATCTCT GGATTCCCCT GGAAGTCAAT
GCGGGTCTTG GGGACGGGAA TGCCTATGTG GGTAATGTAG CGCTTGATCC GGAGACTTCC
CATGAATTGG GATTTGGCTT TGATTGGCAG ACTCAGGCTG CCTACTTTTC GCCGCAAGCC
TACTACCGCC GGGTCGATGA TTATATTCAA GGGACTCCAG CCGCCGATCC CGTGGTGATT
GCAGTCAGCA CCAATGCTGC TGGGGACGCC ACCCCCCTTC AATTTAGCAA TGTGGATGCT
GAAATTTACG GCCTTGATGC TGATTTTGGC TACCGCTTCC ATCCCCGATG GCGGCTGGAT
GGGGTGGCGA GTTATGTCCG AGGTAAACGG CGGGATATTA ATGATAACCT GTATCGTATT
GCTCCGCCCA ATTTGCGTCT TTCCCTGACT CATGAGCGGA TTCATTGGTT TACCACCGTT
GAAAGCGTGC TAGTTTATCG GCAGGAAAAT ATTTCAGATA CTAATACTTT GGACCCGGGA
AACGCCAACA ATACAAATGA AGCGACTCCA GGCTATGTCC TGGTTAATCT TTATGGACAA
TACCGGTTGC TTAATCAAGG CATTACCTTC ACCGCGGGAA TCAATAACTT GCTCGACAAA
ACGTATACTA ACCACCTAAC GGGCTTTAAC CGGGTGCTCA ATAGCGATGT CTCCCAAGGA
CGGCGTTTAC CTGGACCTGG ACGCAACTTC TATGCTGCTT TGCGTTATGA GTTTTAG
|
|---|
| Protein sequence | MLKRTPIFVL VATACAASPL LAQDEEVTLP ELEVVGQPVE RAGVEAENKP FATPDTADLL
RRVPGANVNA NGPIAGMVQY RGMFGPRMNV RINGTPIESG GPNWMDPPLS YAPRSLVESI
EVTRGVGSVS TGSGIGGYVE AKTKSSHFTG SEQFEFHSDV DIAGHSVDGG YNLGGILSLS
NDRHRLHFLG SRDDGGDTEF GDGTIKATEY ERNTYGAGYG FKTGDHEFSA DYQRLDTENS
GTPSLPMDIS FIRTNRAGGK YTGFWNDIQL ETRFGYSDVD HQMNNFRLRQ AANFCALPAP
FCQGDDKRLV NAGSEDFNYG LKATFALWGG DLAIGADGHA AQHNATVLDP DFAPFFVTNF
NNAQINKYGF FSEWTKEIYS NWELQLGARY DRVEMDADGV NAFPAQLADR GMGGMPAQMI
QMLRNRFNGA DRGQNNNNVD WVAELSYQMN SALRWTFGAA RKMRSPTYIQ RYLWIPLEVN
AGLGDGNAYV GNVALDPETS HELGFGFDWQ TQAAYFSPQA YYRRVDDYIQ GTPAADPVVI
AVSTNAAGDA TPLQFSNVDA EIYGLDADFG YRFHPRWRLD GVASYVRGKR RDINDNLYRI
APPNLRLSLT HERIHWFTTV ESVLVYRQEN ISDTNTLDPG NANNTNEATP GYVLVNLYGQ
YRLLNQGITF TAGINNLLDK TYTNHLTGFN RVLNSDVSQG RRLPGPGRNF YAALRYEF
|
|---|
| |