| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0511 |
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| Symbol | |
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| ID | 3706682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 551973 |
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| End bp | 553718 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637737020 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_342564 |
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| Protein GI | 77164039 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAGG CTCCTTTCCG ATTAACCGCT GGGTTAGTAG TGTTGCTGCT AGCAGGCTGT
GCTACGCAGG AAATGCGCCC AGCGGTTGCC GCTAAGGCTG AAGAGAATAC CACGGGACCG
GCGACAGCAA CGGCAATCCC GGAGACAAGG TATCCAGATG TTGAATTGAC CCCTGCCCTG
CTGTATCAAC TGCTTTCTGC TGACATTGCG GGCCAGCGCG GTCAAATTGG CTATGCGATG
GAGGTTTATT TGCAAGCAGC GGGAGAAACT CGCGATCCGC GCCTCGCGGA GCGGGCAACC
CGTATCGCCC TCTTTGCTCG GGATATCAGC GCGGCTACCC AGGCAGCCAG GTTATGGGTG
AGGGCGGACC CGAGCAATGG GGATGCGCGC CAAGCTTTAG TCTCTTTGCT CCTCGGGCAA
CAGCAATACA ATGAAGCTGA AAATCACCTA GAGCATTTGG TTGCCCTAAG CCCGGAAAGC
GGTGAACGTA CTTTTTTAAA GATTGCTACC ATGTTGGCTG GGAGCGCAGA CCCAGAAACA
GCATTGGCGT TAATGGGCAA TCTATCCGCC TTTCAAGCCA ACGATCCAGA TGCCCTCTAT
GGGTATGCTT ACCTTGCCTT GCAGCTAAAG CAGTTGGATC TCGCCCTGAG CACGGTAGAG
CGGGTAATTA TCCAGCGTCC CGAAGCGGAT AGGCCCCTGA TCATGCGGGC TAGAATTCTC
CAGCAGCAGG GGCGGGAGGA AATGGCCCTC GAATCGCTGG AAACGGTGAT TGAAAATGAA
GAGGCGAGTA TTCCTTTACG TTTAGCCTAT GGGCAAATGT TGATGGAAGC CGGTCAAGTA
GCTAAGGCTG AGCGTTTGTT CGAGCAGCTA GAACAAGCGC AGCCCGAGAA TCCAGACGTC
CTGTTGGCCC AAGGCTTATT AGCTATGGAA CGGTTGGAGT ATAAGCCGGC GGAAGACTAT
TTTCAGCGTT TGCTAAAATT AGGCCAGAAT GTAGACCAAG CTCGTTTTTA TCTAGGGCGG
TTAGCTGAAC TACAAAGTAA TGCTGGTAAG GCCATTGATT GGTATGCCTC AATTACGGGC
GGCAGGTTGA TGGTGGATGC CCAGGTTCGC CAGGCGGTAG TGACAGCGCA ACAGGGCAAT
CTACCGGCCG CCCGTCAACA TTTGCAATTA TTAAGTAGAA AATTCCCCAC TCAGGCCGAT
CGGTTTCAGC TTGCAGAAGG TGAGATTCTT ATCAATGCTG GGCGTTATGA GGAGGCGATG
AGCCATTATG ATAATGCGCT GCACAGCCGC CCAGATGATA CTAATTTGCT CTACGCTCGC
GCTTTGGTGG CAGAAAACCT AGGCCGGCTG GATATTGCTG AACAGGATTT GCAGCGGGTT
ATAACCTTAG AGCCGAGTAA TGCCGAGGCC CTCAATGCGC TTGGCTATAC CTTAGCGGAT
CGAACGAGAC GTCTTGAGGA AGCGCTACGC TATATTTCCC GGGCAATGAG GTTAAAGCCT
AATAATGCGT TTATTCTTGA TAGTATGGGC TGGGTACATT ACCGCTTGGG AAATTACGAC
AAAGCGGAGA AATATTTGCG GGAGGCGATG GAGCTCCGCA AAGACCCGGA AATCGCGGCC
CATTTGGGTG AAGTGCTGTG GGCAAAGGGT GACAGGGAGG GTGCCCGCCA GGTATGGCAA
CATACGCTTA AAATGAACCA AGGCAATAAA GTGCTTTTGG AAGTTATGCA GCGCTTTCAG
GAATGA
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| Protein sequence | MKQAPFRLTA GLVVLLLAGC ATQEMRPAVA AKAEENTTGP ATATAIPETR YPDVELTPAL
LYQLLSADIA GQRGQIGYAM EVYLQAAGET RDPRLAERAT RIALFARDIS AATQAARLWV
RADPSNGDAR QALVSLLLGQ QQYNEAENHL EHLVALSPES GERTFLKIAT MLAGSADPET
ALALMGNLSA FQANDPDALY GYAYLALQLK QLDLALSTVE RVIIQRPEAD RPLIMRARIL
QQQGREEMAL ESLETVIENE EASIPLRLAY GQMLMEAGQV AKAERLFEQL EQAQPENPDV
LLAQGLLAME RLEYKPAEDY FQRLLKLGQN VDQARFYLGR LAELQSNAGK AIDWYASITG
GRLMVDAQVR QAVVTAQQGN LPAARQHLQL LSRKFPTQAD RFQLAEGEIL INAGRYEEAM
SHYDNALHSR PDDTNLLYAR ALVAENLGRL DIAEQDLQRV ITLEPSNAEA LNALGYTLAD
RTRRLEEALR YISRAMRLKP NNAFILDSMG WVHYRLGNYD KAEKYLREAM ELRKDPEIAA
HLGEVLWAKG DREGARQVWQ HTLKMNQGNK VLLEVMQRFQ E
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