Gene Noc_0393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0393 
Symbol 
ID3706564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp435130 
End bp435981 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content55% 
IMG OID637736905 
Productmodification methylase HemK 
Protein accessionYP_342449 
Protein GI77163924 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2890] Methylase of polypeptide chain release factors 
TIGRFAM ID[TIGR00536] HemK family putative methylases
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.27942 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGCTTA ATTTTTCAAT AGCCGAGGCA ATTGAATTCG CCGGAAATCG CTTAGTTTCC 
GGGGATGGCG GACGTTTAGA GGCTGAGAGG CTGCTAGCTT ACCTGCTCAA GGTAGAACGG
AGTTATCTTT ATGCTTGGTC CGATAGGCGG TTGACGCCAA CCCAATGGGT CAGCTTCCAA
CGGCTATTGC AGCGCCGGGC CAAGGGTGAA CCTTTGGCTT ATATTCGCGG CTGGCAGGAG
TTTTGGTCTC TTAACTTGCA AGTCACGGAG GCCACGTTGA TTCCGCGTCC GGAAACGGAA
CAAGTAGTGG AATTGGCCCT CCAGCGGCTA GATTTAGAGC GGGCGCTTAA CGTTGCCGAT
TTGGGAACGG GTAGCGGCGC TATCGCGCTT GCCATGGGGA GCGAGCGGCC TCGGGCGCGG
GTAATTGCAA CCGACGTTTC GGCAGAGACT TTGGAGGTGG CTAGGGAAAA TGGGCGGCGC
CTTGGGCTAT GCAATGTAAC CTTCCGGTTA GGCGATTGGT TCGTCCCGTT AGTGGGGGAA
CGCTTCCACC TCATTGCCAG CAACCCTCCC TATATTGCCG AAGGGGACCC TCATCTAACC
CAGAATGGTT TAGCCTTTGA GCCTGATATC GCCTTGATCG CAAAAGATAA AGGTTTAGGG
GCGGCACGCC ATATTGCCAT GACTGCCCGA GAGCACCTCC TTGATGGAGG GTGGTTATTG
CTGGAGCATG GCTATGAGCA GGGACCGTCC CTGTTAGCCC TATTTACCCA GTTAGGCTAC
CAGCAAGTAG CTGATTTTTG TGATTTGGCC GGTTTGCCCC GCGTGGTGGC TGGGCAGTGG
CGGGCTTGCT AA
 
Protein sequence
MTLNFSIAEA IEFAGNRLVS GDGGRLEAER LLAYLLKVER SYLYAWSDRR LTPTQWVSFQ 
RLLQRRAKGE PLAYIRGWQE FWSLNLQVTE ATLIPRPETE QVVELALQRL DLERALNVAD
LGTGSGAIAL AMGSERPRAR VIATDVSAET LEVARENGRR LGLCNVTFRL GDWFVPLVGE
RFHLIASNPP YIAEGDPHLT QNGLAFEPDI ALIAKDKGLG AARHIAMTAR EHLLDGGWLL
LEHGYEQGPS LLALFTQLGY QQVADFCDLA GLPRVVAGQW RAC