| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0339 |
|---|
| Symbol | |
|---|
| ID | 3706510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 369158 |
|---|
| End bp | 370654 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637736851 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_342395 |
|---|
| Protein GI | 77163870 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00480998 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTC TCCCCCTTAA TTTATACACG GCTGCCCAAG TACGTGAATT GGACAGGTGC
ACCATTGAAG AGTTTGGAAT ATCTGGCGCC ATGTTAATGG AGCGAGCCGG TAAGGCTTCC
CTAGAGCAAC TACGCAAACA CTGGCCACAG GCACAACGCT TAGTGATTAT CTGTGGAGTC
GGCAATAATG GTGGAGATGG CTATGTCCTG GCCCGCCTAG CCCGTAAAGC CGAAATGTAT
GTATCCATCT ATCAACTAGG GGATAATAGC AAGCTTAGCA CCGATGCCCA AGCCGCGCGA
CAAATGCTAT TAGACAGCGG CATGGAAATC CTTCCCTTCC AACCCCAAGT GCTCCGCGCC
GCGGATGTGG TAATAGATGC TATTTTCGGC ACCGGACTCA GCCGGGGAGT CACTGGCCAG
TGGGCCGATG CTATCGAAGC CATCAATACC TGCGGACAGC CGGTGTTTGC TATGGATATC
CCCTCTGGGC TCCATGCCGA TACCGGGAAT ATCCTGGGTA TCGCCATCAA AGCCCAAGTG
ACTGCCACCT TTGGGGGCCT GAAACAAGGG ATGTTCACCC ATCTGGGTCC GGATTACTGT
GGCGAGATTG CTTTCGACTC CCTTAGTATT CCTCCCGAAG CCTATCACGG GGTGACGCCT
TCGGCCCGCC GCATTACCCT TGAAGATCAC ATCACCAAAC TCCCCTCCCG CGCTAAGGCT
GGCCATAAGG GCGATTACGG CCATGTTGTC ATCATTGGAG GCGAGAGAGG AATGCCCGGA
GCCGCACGCA TGGCGGGGGA AGCAGCTTAT CGGGTAGGAG CGGGGCTGGT CAGTATTGCC
ACCCGGGAGA AGCATGCTTC CCTGCTCAAC CTAGCCCGCC CAGAATTGAT GTGCTACGGG
GTAGAGAGCG CCGAAGAGTT AAAACCATTG CTGAACCGGG CTACTACCCT TGTCATTGGT
CCAGGCCTAG GCCAGGATCT TTGGGGCCAA ACAATGCTCG CTGAGGCACT CAACCATTCC
CACCCTCTGG TGGTGGATGC GGATGCCCTC AATCTGCTAG CCAGTCAACC CCGCCAGCAT
AACCGCTGGA TTATCACTCC CCACCCCGGT GAAGCATCGA GACTGCTGAA CATTAATATT
GAAGAAATAC AAGCAGACCG TTTTGCCGCA GTCCAGGCTC TTCAACAGCG CTACGGCGGG
GTTGCGGTGC TTAAAGGAAA TGGGTCTCTG GTATGCTCCA CGAATCACCC CCTAGGGCTA
TGCACGGCAG GCAATCCAGG AATGGCCAGT GGCGGTATGG GGGACGTCCT CTCCGGAACT
ATCGCCGGCC TGCTGGCTCA AGGACTTACC CTGAATAATG CGGCCCATTT GGGGGTAACA
ATTCATGCCA TGGCTGGCGA TCGCGCTGCC CGTGAAGGGG GTGAGCGGGG ACTGCTGGCG
AGCGATTTGA TGGAACATCT GCGACAACTG GCCAATCTTC AACAAATAGG CCCATGA
|
|---|
| Protein sequence | MAILPLNLYT AAQVRELDRC TIEEFGISGA MLMERAGKAS LEQLRKHWPQ AQRLVIICGV
GNNGGDGYVL ARLARKAEMY VSIYQLGDNS KLSTDAQAAR QMLLDSGMEI LPFQPQVLRA
ADVVIDAIFG TGLSRGVTGQ WADAIEAINT CGQPVFAMDI PSGLHADTGN ILGIAIKAQV
TATFGGLKQG MFTHLGPDYC GEIAFDSLSI PPEAYHGVTP SARRITLEDH ITKLPSRAKA
GHKGDYGHVV IIGGERGMPG AARMAGEAAY RVGAGLVSIA TREKHASLLN LARPELMCYG
VESAEELKPL LNRATTLVIG PGLGQDLWGQ TMLAEALNHS HPLVVDADAL NLLASQPRQH
NRWIITPHPG EASRLLNINI EEIQADRFAA VQALQQRYGG VAVLKGNGSL VCSTNHPLGL
CTAGNPGMAS GGMGDVLSGT IAGLLAQGLT LNNAAHLGVT IHAMAGDRAA REGGERGLLA
SDLMEHLRQL ANLQQIGP
|
|---|
| |