Gene Noc_0252 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0252 
Symbol 
ID3706326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand+ 
Start bp278467 
End bp279039 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content46% 
IMG OID637736768 
Productshikimate kinase 
Protein accessionYP_342312 
Protein GI77163787 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAATT TTAATATTTT CCTTGTGGGT CCCATGGGGT CCGGTAAAAC GACCATTGGC 
CGGTATCTAG CTAGGATAAC GGGTAAGAAC TTTTATGATA GCGATCGTGA AATTGAATCC 
CGTACCGGGG TTAGCATTCC CGTTATTTTT GAAATTGAGG GGGAAAGTGG TTTTCGGCAA 
CGCGAATGTA AGATTATTGC TGAGCTTGTC CAACTAAACA ATATTGTATT GGCTACCGGA 
GGGGGGGCTG TACTTGCCGC CGAGAATCGG CGGGAATTAT CTCAGCGGGG AATCGTCGTT 
TATTTATATG CGCCGCCAAA GCAGCTGTAT CGTCGCACCT CGCATGATAA CAATCGCCCT 
TTATTGCGGA CAGGAAATCC GTTAGAACGC TTGAAGTGCT TGCTTAAAGA ACGTGATCCC 
CTCTATCGGG AGGTGGCGGA TGTTATCATT AAAACCGGTA AACAACCTGT TAAGGCGGTT 
GCGAATGAGG TACTCAGGCA ACTTAGACAG TATAAAGGCG GTGCTCCCCA GAGAAAATCT 
TTCGTGCATG TTAAAAGTAA TAAAGGTGCT TAA
 
Protein sequence
MLNFNIFLVG PMGSGKTTIG RYLARITGKN FYDSDREIES RTGVSIPVIF EIEGESGFRQ 
RECKIIAELV QLNNIVLATG GGAVLAAENR RELSQRGIVV YLYAPPKQLY RRTSHDNNRP 
LLRTGNPLER LKCLLKERDP LYREVADVII KTGKQPVKAV ANEVLRQLRQ YKGGAPQRKS 
FVHVKSNKGA