| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0247 |
|---|
| Symbol | |
|---|
| ID | 3706302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 273132 |
|---|
| End bp | 274250 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637736763 |
|---|
| Product | Type IV pilus assembly protein PilM |
|---|
| Protein accession | YP_342307 |
|---|
| Protein GI | 77163782 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
|---|
| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.291692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAATT CATTGGTTCG TGTTAGCAAT AATTGGTTGA ACTTTAGGGA CAACTCATTG
AGCTATTTTC TCCGAAAATC CCCTTCTTTG TTGGGAATAG ATATCAGTTC TTCCGCTATT
AAATTGCTTG AGCTCAGCCG AAAGGGAGAG CGTATTTGTG TAGAAAATTA TGCGATTGAA
GCTTTGCCGC CTCATACCGT AGTTGAGAAT AAAATTGAAA ATGTAGAAGC GCTGGGTGAA
ACAATTAAAA GGGCGGTTAA ACGTTCGGGA ACACGGACTA AGAAGGTGGC TGCCGCCGTC
ACTGGATCAG CGGTGATTAC TAAGACCATC TCAGTTCCAA ATGCTCTTTC AAATAGGGAG
CTGGAAAGTC ATATTGAGCT AGAGGCAGGG CAATATATTC CCTATCCACT AGAAGAAGTT
AATCTAGATT TTGCAGTACT GGGACCTTCA GAAAAAGATT CTGAAAGGGT AGATGTATTG
CTTGCTGCTT GCCGTAGCGA AAACATTGAA TCGCGAGTAG CATCGTTGGA GTTAGCAGGT
TTAACGCCGG CAGTAATCGA TGTCGAAGCT TATGCTATGG AAAAAGTTTT TCCTTTGATT
GCGGGTCAGA TGTCAAGCCG GGGGAAAGGG CAAACTATTG CCGTTGTTGA CGCGGGGGCA
ACGCTAACTA CTATTAATGT ATTGCATGAT TATAAAATTA TCTATACGCG AGAGCAGATC
TTTGGCGGTA ATCAGCTTAC GGAAGAAATA CAAAGGCGGT ACGGCTTGTC CTATGAGGAG
GCTAATTTAG CGAAGCGCCA GGGGGGGTTG CCGGATAATT ATATTCCCGA GATTTTAGAT
CCTTTCAAAA AATCAATCGC GCAACAGGTT AGCCGCGCTT TCCAATTTTT CTTCTCTTCA
ACCCAGTATA ACGATGTTGA CCATGTGATA TTAGCAGGTG GATGTGCCTC TATTCCAGGC
GTGGATGAGT TGATTGAGCA TATGGTGGGT ACGGCTGTTT CGGTCGCTAA TCCTTTTTCT
GATATGGTGC TGGGATCTCA GATAGAAGCT AAAGCGCTAC GCAATGATGC TCCAGCTTTA
ATGACTTCTT GTGGCTTGGC ACTTAGGAGT TTCGACTAA
|
|---|
| Protein sequence | MLNSLVRVSN NWLNFRDNSL SYFLRKSPSL LGIDISSSAI KLLELSRKGE RICVENYAIE
ALPPHTVVEN KIENVEALGE TIKRAVKRSG TRTKKVAAAV TGSAVITKTI SVPNALSNRE
LESHIELEAG QYIPYPLEEV NLDFAVLGPS EKDSERVDVL LAACRSENIE SRVASLELAG
LTPAVIDVEA YAMEKVFPLI AGQMSSRGKG QTIAVVDAGA TLTTINVLHD YKIIYTREQI
FGGNQLTEEI QRRYGLSYEE ANLAKRQGGL PDNYIPEILD PFKKSIAQQV SRAFQFFFSS
TQYNDVDHVI LAGGCASIPG VDELIEHMVG TAVSVANPFS DMVLGSQIEA KALRNDAPAL
MTSCGLALRS FD
|
|---|
| |