Gene Noc_0229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0229 
Symbol 
ID3706284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand+ 
Start bp253253 
End bp254296 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content54% 
IMG OID637736745 
ProductUDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD 
Protein accessionYP_342289 
Protein GI77163764 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
TIGRFAM ID[TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.971015 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAATTC GTCTTTCAGA GATTGCCCAG TTTTTGGGTT GCGCTATTGA GGGCGATGGA 
GAAGCCCCTA TCCGGGGGAT TGCGCCCCTC CATCAGGCGC AGGCAAGCGA GCTAAGCTTT 
TATACTAATC GTAAGTACGC GGCTCAGGCT CGGTTATCAA AGGCGGGGGC TATCATAGTA 
GGGGCCAAGG ATCGGGAACA ATTTGCGGGT CGTCGCCTGC TTATTTCGGA CAATCCTTAC 
CGTGATTTTG CTCGAGTCGT GGATAGGTGG TTTAATCGCT CTTACCGTCC GGCGCCAGGT 
GTGCATCCTA CGGCTATCGT GGGGGACGAC GTACAAATTG CGGAAAACTG CAGTATTGGG 
GCCTATTGTG TAATTGAAGA CGGGGTGACT ATCAAAGCTC ATACCGTCTT ATTTCCCTTT 
TGTTACGTGG GCGCTAAGAC GATTCTCGGT GAGCATTGCT TGCTCTATCC GCGCGTTACC 
CTGCTGGAGC GGGTGAGGAT TGGGCACCGG GTTATCCTTC ACCCTGGCGT GGTTATTGGT 
GGCGATGGTT TTGGATTTGC GCCGGACCCT CCTCAGGGCT ATTTTAAGGT GCCGCAAGTG 
GGGTGGGTAG AGATTGCCGA TGATGTGGAG GTGCAATGTA ATACAGCCAT TGACCGGGGG 
GCGTTGGGAC CGACCCGAAT CGGTCAGGGC AGCAAAATCG ATAATCTGGT TCAAGTTGGC 
CACAATGTAG AGATTGGCGA GCACAGCATT ATTGTTAGCC AGGTGGGTAT TTCTGGGAGT 
AGCAAAATTG GTAATTGGGT GACCTTGGCG GGCCAGGTAG GGTTAGTGGG TCATATTCGG 
ATCGGCGATG GGGCCGTGAT AACCGCCCAA TCCGGGGTGG CTAAGGATGT GCCACCCAAG 
GCCATTATGA CTGGCAGCCC CGTCCAGCCT ATGATGGAAA ACCGCAGGGC GCTGGCAGAG 
CTGAACCGGC TTAGGGAGTT GCGCAAAAAG GTCCGTGAGT TGGAGCGGCG ACTCACGGTG 
CTGGAGCAAG TTGAAAGCTG CTAA
 
Protein sequence
MEIRLSEIAQ FLGCAIEGDG EAPIRGIAPL HQAQASELSF YTNRKYAAQA RLSKAGAIIV 
GAKDREQFAG RRLLISDNPY RDFARVVDRW FNRSYRPAPG VHPTAIVGDD VQIAENCSIG 
AYCVIEDGVT IKAHTVLFPF CYVGAKTILG EHCLLYPRVT LLERVRIGHR VILHPGVVIG 
GDGFGFAPDP PQGYFKVPQV GWVEIADDVE VQCNTAIDRG ALGPTRIGQG SKIDNLVQVG 
HNVEIGEHSI IVSQVGISGS SKIGNWVTLA GQVGLVGHIR IGDGAVITAQ SGVAKDVPPK 
AIMTGSPVQP MMENRRALAE LNRLRELRKK VRELERRLTV LEQVESC