| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0200 |
|---|
| Symbol | |
|---|
| ID | 3706235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 217663 |
|---|
| End bp | 218760 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637736717 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_342261 |
|---|
| Protein GI | 77163736 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGC GTCTTATAGT GGTACTGTTG GCCTTGGGTT TATTCTTCGG TGGTATCTTC
GGCTGGAAAT ATCATCAGCA ACAACAGCAA GCTGCCCAGG CGGCCATGCC GCCCCCGCCG
GCTACCGTAG CCGCTGCGAA GGCCCGCCCA GAATCCTGGC GCACTTCTTT ACATGCGGTG
GGTAGCTTGG TAGCTACCCA GGGTGTTTAT GTGACTAATG AGATTGCCGG GCTTATCGAA
GCAATTAACT TCGAATCTGG AGAGCGGATT AAAAAAAACA AATTGTTACT GCAGCTTGAG
GATAGTGTCG ATAAAGCAGA ACTTGAAGGT CTGCTGGCGG AACAGAAATT GGCGGAGCTG
CAATTCCAGC GCAATGCCCG TTTGCTGAAA AAGAAAATGG TATCCCGTTC TATCTATGAT
GAGAGCCAGG CCCAGCTAGA AAACGCCCAA GCCATGGTAG CGGCCAAGCG GGCCTTGATA
CAAAAAAAGC AGATCCGGGC CCCTTTTTCT GGCTTATTGG GAATCCGCCA GGTCGATCTG
GGTGAGTATT TAGCACCAGG TTCTCCTATT GTGCTCTTGC AGGCGCTCGA TCCTATCTAC
GTGGATTATT CTCTGCCCGA GCGTTATTTT TCCTTGCTTG CTCAAGGTCA AACAGTTCTT
ATTACAGTCC AGGCTTATCC TGCTCAGCAT TTTAAAGGCC GCATCACGGC GATTAATCCG
GGAATTGACC CGAACAGCCG CAATGTCCAA GTGCGGGCTA CTTTTGACAA TCCAGAGCTT
CATCTACGGC CGGGGATGTT TGCCGAAGTG CGAGCAGTAT TACCGGAGAA AAAACAAGTC
TTGACGGTGC CCCAAACAGC CATTACCTAT AATCCCTATG GCGATATGGT GTTCATCATC
CAGAAAGAAA ACGGTGGCCT GGTGGTTCAG CAACAACCGG TGCGAACAGG GAAGGTGCGC
CAGGGCCAGG TTGAGATTAT CAAAGGATTG CAGGCCGGCG ATTGGGTGGT CAGCGCGGGT
CAAATGAAAT TACATAGCGG TCAGCAAATT CGGATTAGCG AGCAAGAAGT ACTGGATGGG
CAGGTAGACG GCACATGA
|
|---|
| Protein sequence | MLKRLIVVLL ALGLFFGGIF GWKYHQQQQQ AAQAAMPPPP ATVAAAKARP ESWRTSLHAV
GSLVATQGVY VTNEIAGLIE AINFESGERI KKNKLLLQLE DSVDKAELEG LLAEQKLAEL
QFQRNARLLK KKMVSRSIYD ESQAQLENAQ AMVAAKRALI QKKQIRAPFS GLLGIRQVDL
GEYLAPGSPI VLLQALDPIY VDYSLPERYF SLLAQGQTVL ITVQAYPAQH FKGRITAINP
GIDPNSRNVQ VRATFDNPEL HLRPGMFAEV RAVLPEKKQV LTVPQTAITY NPYGDMVFII
QKENGGLVVQ QQPVRTGKVR QGQVEIIKGL QAGDWVVSAG QMKLHSGQQI RISEQEVLDG
QVDGT
|
|---|
| |