| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0180 |
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| Symbol | rpsA |
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| ID | 3706213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 199616 |
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| End bp | 201301 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637736697 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_342243 |
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| Protein GI | 77163718 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000762655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGAAA GCTTTGCAGA GTTGTTTGAG GAAAGCCAGG CGGATATGCC GATGGCGCCA
GGTTCTATTG TAACGGGCAC CGTCATGGAA ATTCGTTCCG ACGTTGTGAT TGTCAACGCC
GGATTTAAGT CCGAGGGAGT GATCTCTGCG GAACAGTTCC GTGATGAAAA GGGAAATTTG
AATATCTCTG AGGGTGATTT AGTCGAAGTC GCTCTGGAAG CCATTGAGGA TGGTTTTGGC
GAGACTCGTC TTTCCCGCCA GAAGGCCAAG GAAGCTCGGG TTTGGAATGA TCTTGAAGGA
GCCTTTGAGG CAGGCGAAAC CATTACCGGC GTGTTGACTG GCAAGGTCAA AGGCGGTTTT
ACAGTGGATT TAAATGGGGT TCGTGCGTTT CTACCGGGCT CATTGGTAGA TGCCCGCCCC
GTGCGAGACA CTGCCTATCT TGAGAGTAAA GAACTTGAAT TTAAACTCAT CAAGCTGGAT
CGTCGGCGCA ACAATATAGT GGTTTCACGC CGTGCAGTTA TGGAAGCCGA GTACAGTGCA
GAGCGAGAGG CGCTCTTATC TAGTTTAGAG GAAGGAAAGA CGGTGAAGGG CGTCGTCAAA
AATCTTACTG ATTATGGCGC CTTCGTGGAC TTGGGAGGGT TAGATGGATT GCTCCACATC
ACGGATATGT CGTGGAAACG AATCAAGCAT CCTTCCGAAG TAGTGAATAT TGGCGATGAC
ATTACCGTTC AGGTGCTCAA ATTCGATAGA GAGCGCCAGC GCGTCTCTCT CGGGCTGAAG
CAAATGGGAG AAGATCCCTG GAAAGATTTG GCGCGGCGTT ATCTTGACGG TACTCGCCTC
TTTGGTAAGG TAACGAATGT TACCGACTAT GGTTGTTTTG TGGAGATTGA AGAAGGGGTA
GAGGGTTTGG TTCATATGTC AGAGATGGAC TGGACCAATA AAAATATCCA CCCCTCGAAG
ATGGTTCAAG TTGGTGAGGA AGTTGAGGTG ATGGTGCTTG ATATTGATGA GGAGCGCCGT
CGTATTTCCC TAGGAATGAA GCAATGCCTA CCTAATCCAT GGGAAGAGTT TGCCCATAGA
TATAATAAGG ATGATCGCGT AGCTGGCGAG ATTAAATCCA TTACCGACTT TGGCATTTTT
GTCGGCTTAG AGGGGGGCAT TGATGGCCTG GTTCATTTAT CGGATATTTC CTGGTCGGCT
TCGGGCGAAG AGATAATCCG TGATTATAAG AAAGGCGATC AGGTTGAGGC GGTTGTTCTG
GCCATTGATC CAGAGCGAGA GCGCATTTCT CTAGGAGTCA AGCAACTTGA GGACGATCCT
TTCTCCAGCT ATATTGCGAC CTGCCCTAAA GGCAGCATAG TTAAGGGAAT CGTCAAGGTG
GTTGATACTA GAGGCGCGGT CATTGAGTTG GCTGAGGGTG TGGAAGGACA TCTGCGCGCC
TCAGAAATTG CTAGAGAGCG TATAGATGAT GCCCGTACTT CCCTTAATGT GGGGGACTCA
ATAGAGGCCA AGTTCACTGG CATCGATCGT AAGAATCGTG TAATTACCCT CTCCGTTCGT
GCTAAAGATG TAGAAGAAGA GGCGGAAGCT ATTAAGGAGT ACTCCGGAAC GGGTGCGGAA
GCTGCTTCGA CTACACTGGG CGATATCCTC AAGGAGCAAA TGGAAAGGCA AGAGGAAGAA
GGCTAA
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| Protein sequence | MGESFAELFE ESQADMPMAP GSIVTGTVME IRSDVVIVNA GFKSEGVISA EQFRDEKGNL
NISEGDLVEV ALEAIEDGFG ETRLSRQKAK EARVWNDLEG AFEAGETITG VLTGKVKGGF
TVDLNGVRAF LPGSLVDARP VRDTAYLESK ELEFKLIKLD RRRNNIVVSR RAVMEAEYSA
EREALLSSLE EGKTVKGVVK NLTDYGAFVD LGGLDGLLHI TDMSWKRIKH PSEVVNIGDD
ITVQVLKFDR ERQRVSLGLK QMGEDPWKDL ARRYLDGTRL FGKVTNVTDY GCFVEIEEGV
EGLVHMSEMD WTNKNIHPSK MVQVGEEVEV MVLDIDEERR RISLGMKQCL PNPWEEFAHR
YNKDDRVAGE IKSITDFGIF VGLEGGIDGL VHLSDISWSA SGEEIIRDYK KGDQVEAVVL
AIDPERERIS LGVKQLEDDP FSSYIATCPK GSIVKGIVKV VDTRGAVIEL AEGVEGHLRA
SEIARERIDD ARTSLNVGDS IEAKFTGIDR KNRVITLSVR AKDVEEEAEA IKEYSGTGAE
AASTTLGDIL KEQMERQEEE G
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