Gene Noc_0177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0177 
Symbol 
ID3706210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp196685 
End bp198019 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content53% 
IMG OID637736694 
Product3-phosphoshikimate 1-carboxyvinyltransferase 
Protein accessionYP_342240 
Protein GI77163715 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0128] 5-enolpyruvylshikimate-3-phosphate synthase 
TIGRFAM ID[TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0229474 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCCTA TCGAAGAAGT ATCGCAAGAT ACGATGGCTT TTGTGGTGGC GCCGGGGGGG 
GCGCTGAGGG GTCGGTTACG GGTTCCCGGG GATAAGTCTA TCTCCCATCG GGCTATTATC
TTGGGCGCGT TGGCCGAGGG TATTACCCAG ATCACTGGGT TTTTGGAGGG AGAAGATACT
CTGGCAACGT TGCAGGCCTT TCGGGATCTC GGGGTAAGCA TTGAGGGACC TGAGGGAGGA
CGGGTAAAAA TACATGGTGT AAGTCTACAG GGTTTACGGG CGCCGGAAAA ACCCCTTTAT
TTAGGTAACT CAGGAACATC AGTGCGATTA CTCGCCGGTC TTTTCGCCGG CCAATCCTTT
GATGTCATAC TTAGGGGCGA TGAGTCTCTC TCTCGCCGTC CCATGCGGCG AGTCTGTGAC
CCCTTAGCCC GAATGGGCGC TTTTATCGAG ACGACGGCTC AAGGTACTCC CCCCCTACAC
ATTCATGGCG GACAGTCACT GTATGGTATT GAATATGCGA TGCCGATGGC CAGCGCCCAA
GTCAAATCCA GCCTGTTATT GGCGGGACTT TATGCATCGG GACGAACCTG TGTGGTTGAG
CCTGCTCCGA CAAGGGATCA CTCTGAGCGT ATGCTGGCCG GTTTTGGCTA CCCCGTAGAG
CGAGAGGGTG CAAAAGTTTG TATCCAAGGG GGGGGAACGT TGCATGGTAC TGTGGTTGAG
ATCCCTGCAG ATATTTCTTC GGCGGCCTTT TTTATGGTGG GAGCCGCGAT TGGTAAGGGT
TCGGATATTT TATTGGAGCA TGTCGGTATC AATCCGACCC GGACAGGAAT TATTGATATT
CTCCGGCGTA TGGGAGCAGA AATTGAAATA AGAGAAACAG GTGTAGTTGG CGGCGAACCG
GTAGCAGCGA TACGGGTCCG AGCTAGCCGG TTGCATGGGA TTAATATTCC TGAAGACCTG
GTTCCGTTGG CGATAGATGA ATTCCCGGCC CTATTTATAG CCGCGGCTTG TGCCGAAGGC
GAGACGGTAT TGGCTGGAGC TGGAGAGCTG AGGGTTAAAG AAAGTGACCG TATCCAGGTG
ATGGCTGATG GTTTGCAAGC TTTGGGAATT TCTGCTCAGC CCACGGCGGA TGGAATTATT
ATCCAAGGGG GAGAATTGCA AGGGGGAGAG GTCCATAGTC ACGGCGATCA CCGATGCGCC
ATGGCCTTTG CCATGGCTTC CCTAGTTGCC AAGGGCCCTA TTATTATTCG TGATTGCGCC
AATGTGGCCA CTTCTTTTCC GGGTTTTTTG GAGTTAGCTT GTGGTGCTGG TTTAGCAATT
CGCCATGGAA AATAG
 
Protein sequence
MQPIEEVSQD TMAFVVAPGG ALRGRLRVPG DKSISHRAII LGALAEGITQ ITGFLEGEDT 
LATLQAFRDL GVSIEGPEGG RVKIHGVSLQ GLRAPEKPLY LGNSGTSVRL LAGLFAGQSF
DVILRGDESL SRRPMRRVCD PLARMGAFIE TTAQGTPPLH IHGGQSLYGI EYAMPMASAQ
VKSSLLLAGL YASGRTCVVE PAPTRDHSER MLAGFGYPVE REGAKVCIQG GGTLHGTVVE
IPADISSAAF FMVGAAIGKG SDILLEHVGI NPTRTGIIDI LRRMGAEIEI RETGVVGGEP
VAAIRVRASR LHGINIPEDL VPLAIDEFPA LFIAAACAEG ETVLAGAGEL RVKESDRIQV
MADGLQALGI SAQPTADGII IQGGELQGGE VHSHGDHRCA MAFAMASLVA KGPIIIRDCA
NVATSFPGFL ELACGAGLAI RHGK