| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0045 |
|---|
| Symbol | |
|---|
| ID | 3705920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 43212 |
|---|
| End bp | 45020 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637736569 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_342117 |
|---|
| Protein GI | 77163592 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.250484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAA TTATGGAACA AGATCGTCAG TCACAATTGA AACTTTTGAT CGCAAGGGGT
AAGGATCGGG GTTATCTATC CTATAGCGAG GTAAACGATC ACCTGCCCGA CGACGTGATC
GATCCGGAGC AAATTGAAGA CATTATTACA ATGTTCAACG ATATGGGTAT CTCCGTGCAT
GAGGATATGG CGGAAGCCGA TGCCCTAGCA ATTATGGATA CCGCCGTTGC CGACGATGAG
GTGGCTGAGG AGGCTGCTGC TGCTCTGGTC TCGGTGGATG GAGAGTTTGC CCGAACTTCG
GATCCGGTCC GTATGTATAT GCGGGAAATG GGCAGCGTTG AGCTTTTGAC TCGGGAAGGG
GAGATCAGCA TCGCTAAGCG AATCGAAGAG GGAATGCGGC AAGTTTATAC CGCTCTTTCT
CGTTTTCCAG GCAGCGTGGC TGAATTATTG TGTCAATACG AAAAAGTGGA GGCGGATGAA
ATCCGCTTGG CTGATGTGAT TTCCGGGTTT CAGGAATCAG AGGAAGCGGA TTTAAAGGAA
TCTGCTGCAG AAGAAGCTTC CGTCTCTTCC GAAGGTAGCA CGGAGGAGGA AGAAAGTGAT
AATGGCCTTG ATCTAGATAG AGTCCGGGAA CAGTTTACTC AACTACGGGA GTTGTATGAG
CGGTATCAGG CGGCTGATCT CAAGGATAAT GATAGAGCGC TAGCTGAACT GAGCGAGTGC
TTTCTTCAGC TTAAGCTTGT GCCTCGTTTA TCTCAACGGT TGATAGAAAA TCTTCGCGGA
GTAGTGGCAG AAATTCGTGT GCTTGAACGG AGCATCATGA AAATTGCGGT GAATTCGGCT
CAGATGCCCC GCAAAGATTT TCTGTCTTCG TTCCAGAAAC AAGAAACCAA CCTAAACTGG
GTAGAAAAGC ATATCCGGGC AAAAAAGCAT TATTCTTCCG TACTCAGAAA ACAAGGGGAC
GCAATTCAGA AAGCCCAAGA AAAGCTCATA GTCTTAGAGC AAAGGGCCGG TATGAGTATT
ACCCAGATTA AGGAGATTAA CCGTTCCCTA TCTATTGGAG AAGCACGGGC CCGGCGGGCT
AAAAAAGAGA TGGTCGAGGC TAATTTGCGC TTGGTCATTT CGATTGCCAA AAAATATACC
AACCGTGGTC TCCAGTTTCT GGATCTGATC CAGGAAGGCA ACATTGGTCT CATGAAGGCC
GTTGATAAAT TTGAATACCG CCGTGGTTAC AAGTTTTCTA CCTATGCGAC TTGGTGGATA
CGGCAGGCAA TTACCCGTTC TATCGCTGAT CAGGCTCGGA CCATCCGTAT TCCGGTACAT
ATGATTGAAA CCATCAATAA GCTCAACCGC GTTTCTCGTC AGATGCTACA AGAGATGGGT
CGAGAGCCAA CCCCCGATGA GTTGGCAGAA CGGGTGGAGA TGCCAAAAGA TAAAGTGCGG
AAGGTCCTTA AGATTGCCAG GGAACCCATC TCCATGGAAA CGCCTATTGG TGACGATGAG
GATTCCCATT TAGGGGATTT TGTCGAGGAC GCTGCTGTCA TATCTCCGCC TGATTCGGCG
ATCTTCTCCG GGCTGAGGGA AACTACACAG TTAATATTAG CCGGTTTAAC TCCCCGCGAG
GCTAAAGTGC TGCGGATGCG TTTTGGGATT GATATGAATA CGGATCATAC CTTGGAAGAA
GTAGGTAAGC AGTTTGATGT AACCCGGGAG AGAATTCGGC AGATTGAGGC TAAGGCTCTA
CGTAAATTGC GCCATCCTTC CCGTTCGGAG CAGCTTCGTA GTTTTTTGGA TATAGAAAAT
AACAACTAA
|
|---|
| Protein sequence | MLKIMEQDRQ SQLKLLIARG KDRGYLSYSE VNDHLPDDVI DPEQIEDIIT MFNDMGISVH
EDMAEADALA IMDTAVADDE VAEEAAAALV SVDGEFARTS DPVRMYMREM GSVELLTREG
EISIAKRIEE GMRQVYTALS RFPGSVAELL CQYEKVEADE IRLADVISGF QESEEADLKE
SAAEEASVSS EGSTEEEESD NGLDLDRVRE QFTQLRELYE RYQAADLKDN DRALAELSEC
FLQLKLVPRL SQRLIENLRG VVAEIRVLER SIMKIAVNSA QMPRKDFLSS FQKQETNLNW
VEKHIRAKKH YSSVLRKQGD AIQKAQEKLI VLEQRAGMSI TQIKEINRSL SIGEARARRA
KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI
RQAITRSIAD QARTIRIPVH MIETINKLNR VSRQMLQEMG REPTPDELAE RVEMPKDKVR
KVLKIAREPI SMETPIGDDE DSHLGDFVED AAVISPPDSA IFSGLRETTQ LILAGLTPRE
AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE RIRQIEAKAL RKLRHPSRSE QLRSFLDIEN
NN
|
|---|
| |