Gene Noc_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0002 
Symbol 
ID3704430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp2396 
End bp3499 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content40% 
IMG OID637736540 
ProductDNA-directed DNA polymerase 
Protein accessionYP_342088 
Protein GI77163563 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCTTTT CCATTAAAAG AGAAGAAATT GTTAGGCACT TAGTAACCGT TTGTGGCGTA 
GTAGAACGAC GCCATACACT GCCTATACTC TCCAACGTTC TCCTTTCGGT TAAAGATTCA
CAGCTTTCTC TGATGGCGAC TGATCTTGAA ATTGAAATAA GGACTGCCCT TAAGGTTTTA
TCTTCAGAAG AAGGCAAAGT AACCGTTTCG GCAAGGAAAT TCTTAGAAAT TTGTCGTGCC
CTTCCTTCTG GATCAGCATT AGAAGCTCAG TATAAAGAAG GACAATTTTA TATTCATTCT
GGTCGCAGCC GGTTTACGCT TAGCACTCTT CCTGCTGAGG ATTTTCCAAG TATCGATAGC
ATTGATGCGG TAGCAGAATT AGAACTGACC CAAGCAGAGC TAAAACAATT ATTGCATCGG
ACGGTCTTTT GTATGGCTCA TCAGGATGTC CGTTACTATC TTAATGGTTT ATTATTGGAG
CTGACGGAAG AATCTATCCA TGCGGTTGCT ACAGATGGGC ATCGTCTTGC GCTAGCTTCT
TTAGCAAAAG GAGCGGACCA AGAGGGAACA GAAATTCAAT CTATCATTCC CCGAAAAGCA
ATATTAGAGT TAGTGCGTTT GTTAGAGGAA TCGCAGGAAC CGGTACGGTT AAAATTTGGT
ACTAACCAGA TGAGGGCAGA ATTCCAAGGA TTGTCCTTCT CTACCAAGCT AATTGATGGA
CAATTTCCCG ACTATAAACG AGTAATACCT GTAGGTTGTG AGAAGCAATT TGTTGCTGAT
CGAGAAAGAT TTAAACAGGC TTTAGTACGG GTAAATATTC TTACTAACGA CAAATATCGT
GGAGTCCACT TACATTTATC AGATTTAAAG CTGCAAGCTA TAGTCACTAA CCTAGAGCAA
GGGTCTGCTG AGGAAGAGCT AGATATAAAA TACCAAGGGG AGAATTTGGA AATCGTCTTT
AATAATTTTT ATCTTATTGA TGTTCTTAAT ATTATTGATA CGAAAGAAGT TAGATTAACT
TTTACTAATG CTAGTAGTAG TTGCCTAATT ACCCCTATTG ATGCATCTGA TAGTAAGTAT
GTTGTCATGC CTATGAGATT GTAG
 
Protein sequence
MRFSIKREEI VRHLVTVCGV VERRHTLPIL SNVLLSVKDS QLSLMATDLE IEIRTALKVL 
SSEEGKVTVS ARKFLEICRA LPSGSALEAQ YKEGQFYIHS GRSRFTLSTL PAEDFPSIDS
IDAVAELELT QAELKQLLHR TVFCMAHQDV RYYLNGLLLE LTEESIHAVA TDGHRLALAS
LAKGADQEGT EIQSIIPRKA ILELVRLLEE SQEPVRLKFG TNQMRAEFQG LSFSTKLIDG
QFPDYKRVIP VGCEKQFVAD RERFKQALVR VNILTNDKYR GVHLHLSDLK LQAIVTNLEQ
GSAEEELDIK YQGENLEIVF NNFYLIDVLN IIDTKEVRLT FTNASSSCLI TPIDASDSKY
VVMPMRL