Gene Noc_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0001 
Symbol 
ID3704429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp175 
End bp1524 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content43% 
IMG OID637736539 
Productchromosomal replication initiator protein, DnaA 
Protein accessionYP_342087 
Protein GI77163562 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCATCCT CGCTTTGGAA GCATTGCCTC AACCACCTAG AGGGAGAACT CGATCCCCAA 
GAGTTCAACA CCTACATTCG CCCCTTGCAA GCAATACAAC AAGGTACTAG TTTGCAACTC
TATGCGCCGA ATCAATTTGT CATTGATTGG GTACAAAACT GCGCTGAGAG CCGTATTAAT
GCTTTATTAT CCCACTATAG CAGCGGTCGT ATCGAAAAGG CACTTCTTGA GGTAGGTTCT
TGTAGCTTGC AGCCTCAGCC TCATATCCAA GCGGTCGAAT TAACCTCAAA ATCTGCACGC
TCTTCTTCTA GAGTAGTTGA TCGGATACCT GAATCTAGAC TCAATAAAAA CTATACTTTT
GATAGTTTTG TGGAGGGTAA ATCCAATCAA TTACCTCGCG CTGCTTCCCA TCAAGTTGCG
GAAAATCCCG GGAGTGCCTA TAACCCTCTT TTCATTTACG GAGGGGTAGG CCTTGGCAAA
ACCCATCTAA TGCATGCGGT AGGCAATTAT ATCCGAAGCC GTAATCCTAG CGCTCGGGTA
GTTTATCTGC ACTCGGAACA ATTCGTTGCT GAAATGATTA AAGCCTTACA ACTTAATGCT
ATCAACGAAT TTAAAACTCG TTATCGCTCA GTAGACATTC TGCTTATCGA CGATATCCAA
TTTTTTGCGG GAAAAGAACG TTCTCAAGAG GAATTTTTTT ATACTTTCAA CACTTTACTT
GAAGTTCAGC ATCAAATAAT CTTAACCTGT GACCGTTTTC CCAAAGAGGT CAATGGATTA
GAGGAGCGAT TAACATCACG GTTTGGCTGG GGGCTAACAG TTGCTGTTGA ACCGCCAGAA
TTAGAAACGC GAGTCGCAAT ATTGATGAAT AAAGCCAGCA TCGAAAATAT CATTCTATCG
GATGACGTAG CGTTTTTCCT AGGGCGCCTC ATCTATTCCA ACATCCGAGA GTTAGAGGGC
GCATTGCGGA GGGTGATTGC TTACTCTCGA TTTACCCACC GTCCGATTAC AATGGAACTA
ACGCGTGAAG CCCTAAAAGA TCTGCTAACG CTACAAGAAA AGCTAGTCAC TATAGAGAAC
ATCCAAAAAA CAGTAGCTGA GTACTATAAA ATTAGGGTTT CTGATTTATC ATCAAAACGG
CGCTCACGGG TAGTAGCTCG GCCTCGGCAA ACCGCAATGT CACTTTCCAA AGAATTAACG
GATCATAGTT TAACGGAAAT TGGAAAATTC TTCGGTGGTA GAGATCATAC TACCGTTCTG
CACGCTTGCC GTAAAATAAA CGAGCTCAAG AGTATAGATC GTCGAATGGC CGAAGACTAT
CACAATCTGC TAAAAAAGTT ATCAACTTAA
 
Protein sequence
MPSSLWKHCL NHLEGELDPQ EFNTYIRPLQ AIQQGTSLQL YAPNQFVIDW VQNCAESRIN 
ALLSHYSSGR IEKALLEVGS CSLQPQPHIQ AVELTSKSAR SSSRVVDRIP ESRLNKNYTF
DSFVEGKSNQ LPRAASHQVA ENPGSAYNPL FIYGGVGLGK THLMHAVGNY IRSRNPSARV
VYLHSEQFVA EMIKALQLNA INEFKTRYRS VDILLIDDIQ FFAGKERSQE EFFYTFNTLL
EVQHQIILTC DRFPKEVNGL EERLTSRFGW GLTVAVEPPE LETRVAILMN KASIENIILS
DDVAFFLGRL IYSNIRELEG ALRRVIAYSR FTHRPITMEL TREALKDLLT LQEKLVTIEN
IQKTVAEYYK IRVSDLSSKR RSRVVARPRQ TAMSLSKELT DHSLTEIGKF FGGRDHTTVL
HACRKINELK SIDRRMAEDY HNLLKKLST