Gene BURPS1710b_A2309 details

Gene Information

• Locus tag: BURPS1710b_A2309
• Symbol: oprM
• ID: 3693026
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: -
• Start bp: 2803557
• End bp: 2805416
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 637732563
• Product: outer membrane efflux protein
• Protein accession: YP_337460
• Protein GI: 76818858
• COG category: [M] Cell wall/membrane/envelope biogenesis; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1538] Outer membrane protein
• TIGRFAM ID: [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.650756
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATAGCC CACCGTTTCT TTCATCGCCC AAGCGCGCGC TGCCGATCGC GCTCGCGCTC 
GGCCTCGCCG GTTGCTCGAT GGAGCCGGCC TACCAGCGGC CCGATGCGCC GATGCCGTCC 
GCGTATCCGA ACGGCCCCGC CTACGCGACG CCGGGCGCGC CGCGCGCGAA CCCGGGCGAG 
CCGGCGGCGG CCGAGCTCGG CTGGCGGAAT TTCCTCGCCG ACGCGCAGTT GCAGCAGCTC 
GTCGCGCTCG CGCTCGCGAA CAACCGCGAC CTGCGCGTCG CGACGCTCGA CATCGACGAA 
GCGCGCGCGC TGTACCGCAT CCAGCGCGCC GCGCAGTTTC CCGCAATCGA TGCGAGCGTC 
GGACTCACGA GCCAGCGCAT GAGCCCCGCG CTGCGCGCGC CGGGGCAGTC CGCGGCGATC 
AACAGCTATG ACGCGAGCGT CGGCCTCACC CATTTCGAGA TCGACCTGTT CGGCCGCGTG 
CGCAGCCTGA GCCACGCCGC GCAGGAGCAA TACCTCGCGA CCGAGGAGGC GCGGCGCAGC 
GTCCACATCA GCCTCGTCGC CGAAGTCGCG AACACCTACC TGACGCTGCT CGCCGATCGC 
GCGCTGCTCG CGCTCGCGCA GGACACGCTC AGGAGCCAGC AGGACGCCGC CGACATGATC 
CACCGCGGCA AGCAGGCGGG CGCGATGGCG CAGCTCGACG AGCATCGCGC GGACACGCAG 
GTGCAGACCG CACGCGTCGC CGCCGAGCAA TACACGCGGC AGATCGCGCA GGACGAGAAC 
GCGCTTGCCG TGCTGATCGG CGGGCCGCTG CCGGCCGGCG TGTCGCGCGC GGCGCCGCTC 
GACGATCGCG CGCTGCTCGC GGAGTTCCCG GCGGGCCTGC CGTCGACGCT GCTCGAGCGC 
CGCCCCGACA TCATGGCCGC CGAGCATCGG CTCATCGCCG CGAACGCGAA TATCGGCGCG 
GCGCGCGCGG CGTTCTTCCC GAGGATCACG TTGACGGGCG CGCTCGGCGT GGCGAGCGCG 
AGCCTCGCGG GGCTGTTCTC CGGCGGCGTC GCGTGGCTGT TCGTGCCGCA GCTCACGCTG 
CCGATCTTCA ACGCGGGCAG CAATCAGGCG AATCTCGATC TCGCGACGGT GCGCCGCGAC 
ATCAACGTGG CCGGCTACGA GCACACGATC CAGGACGCGT TCCGCGAGGT CGCCGACAAC 
CTGGCCGCAC GCGCGACCTA CGAGCGGGAA GTGAAAGCGC AGGAGGCGAT GATCCGCGAC 
CTGGCCGAGA CGAAGCGGCT GGCCGACATG CGTTTTCGCA ACGGCGTCGA CGACTACTTC 
GGCGTGTTCG ATGCGCAACG CCAGCTGTTC GCCGCGCAGC AACTGCTCGT CACCTACAAG 
CTTGCCGGGC TGACGAGCCG CGTGACGCTA TACAAGGCGC TCGGCGGCGG CTGGGTCGAG 
TCGGCGGGCG CGGCGGCCGC GCAACCGCGG ACGGGGCAGG CCGCGCCGAT GGCTCGACCG 
GCAGCCACTC CACCCCAGAC GACGCGACCC GCGCCGGTTG CTCGATCGCA GACGGTTCCA 
CCGCGAACGG TTCAGCCCCC GATCGCCCAA CCGGCAACCG CGCAACCGCA AACGGCGCAA 
GCCGCGCCGG TTGCTCAGTC GCAGACGATT CCACTGCGAA CGGTCCAGCC GCCTATCGCC 
CAATCGTCAA CCTCTCAACC GCAAACGGCG CAAGCCGCGC CGATCACTCA AGCGCGGACG 
ACACCACTCC GAACGGCTCA GCCGCCCGCC GCTCGACAAC AGGCGCCGCA ATCCGCTCCG 
GCGGCTCAAC CGGAGGCAGC TCCACCGCAA ACGGCCCAAC CGCCGATTTT TCAGCCGTAA 

 

Protein sequence

MHSPPFLSSP KRALPIALAL GLAGCSMEPA YQRPDAPMPS AYPNGPAYAT PGAPRANPGE 
PAAAELGWRN FLADAQLQQL VALALANNRD LRVATLDIDE ARALYRIQRA AQFPAIDASV 
GLTSQRMSPA LRAPGQSAAI NSYDASVGLT HFEIDLFGRV RSLSHAAQEQ YLATEEARRS 
VHISLVAEVA NTYLTLLADR ALLALAQDTL RSQQDAADMI HRGKQAGAMA QLDEHRADTQ 
VQTARVAAEQ YTRQIAQDEN ALAVLIGGPL PAGVSRAAPL DDRALLAEFP AGLPSTLLER 
RPDIMAAEHR LIAANANIGA ARAAFFPRIT LTGALGVASA SLAGLFSGGV AWLFVPQLTL 
PIFNAGSNQA NLDLATVRRD INVAGYEHTI QDAFREVADN LAARATYERE VKAQEAMIRD 
LAETKRLADM RFRNGVDDYF GVFDAQRQLF AAQQLLVTYK LAGLTSRVTL YKALGGGWVE 
SAGAAAAQPR TGQAAPMARP AATPPQTTRP APVARSQTVP PRTVQPPIAQ PATAQPQTAQ 
AAPVAQSQTI PLRTVQPPIA QSSTSQPQTA QAAPITQART TPLRTAQPPA ARQQAPQSAP 
AAQPEAAPPQ TAQPPIFQP