Gene BURPS1710b_A1610 details

Gene Information

• Locus tag: BURPS1710b_A1610
• Symbol: sciS
• ID: 3692477
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: +
• Start bp: 1962287
• End bp: 1966195
• Gene Length: 3909 bp
• Protein Length: 1302 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637731864
• Product: SciS protein
• Protein accession: YP_336767
• Protein GI: 76818330
• COG category: [S] Function unknown
• COG ID: [COG3523] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03348] type VI secretion protein IcmF

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.17347
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTTACC TGAAACGCTT CTTGAGATTC GTCTTTTCGT GGCAGATGCT CGCATGCATC 
GCGGTGCTGC TTGTTTGCGC CGCCGTATGG TTCGTCGGCC CCCTGCTCGC GTTCGACGAG 
TTGCGGCCGC TCGCGGGCGT CGTCGTGCGG GTCGCCGTCA TCGTCCTTCT CGTGGCGCTC 
CTTGCGTTCT GGCTGTTGCG CTGGCCGCTC AGCCCGATCG GCGTCGCCGC ACTGTGTCTG 
CTGATCTGGC ACGCGGGGCC GCTCTTCGCG TTCGGCGATC ACCGCCCGTT CGGGCCCGCG 
TGGGTCCGCG TGCTGATCGT CGCCGCGATG CTCTTCTGCT ACGCCGTGTA TGGTCTCTAT 
CGCCTGTGGC AGGCGGTTCG GACGAACGAC GCATTGCTCA AGCGCATTCT CGAGCCGTCG 
GCGGGCAAGC CGGACGCGGC GGCCCAGGCG AACATCCGTG CGGTGAGCGT GGCGGTGTCG 
AAGGCGATCG GTCAACTGAA GCGCTTGCGC GGCGGTGCGT TCGGCTGGCG GCGCTTGCTC 
GAAAGCGGGC GCTACCTGTA TGAACTGCCG TGGTACATGG TGGTCGGCGC GCCTGGTGCG 
GGCAAGAGCG CGGCGATCGC GCGTTCCGGC CTGAAGTTTC CGCTCGCGGA TCAGATGGAG 
GCATCGTCCG AGCGCGCGCG GGGCGGCACG GCCAATTGCG AATGGTGGTT CGCCAACGAG 
GCCGTGTTGA TCGACACGGC GGGCCGTTAC GTGCGGCACG AGGTGCCCGG CGACGAAGAG 
GCGACAGTTG CCAACGGGGC GGAGTGGAAG GGCTTTCTCG GTCTGCTTCG CAAACATCGG 
CCGCGCGCGC CGGTCAATGG CGTGGTCCTG TCGGTCAGCG TCGAGGAGCT CGTCGGGCGC 
ACGCCGGCCG AGCGCACCGC GCACGCAGCC ACGCTGCGCG CCCGCCTGGG CGAGTTGCAT 
CAGGAACTGG GCATTCATTT CCCGGTATAC GTGATCGTCA CGAAACTCGA TTTGCTGCCC 
GGCTTTCCGG AGTATTTCCA GTCGTTGACG GCCGAAGGGC GGACGCAGAT CTGGGGATTC 
ACGCTGCCCT ACGACGCGGA GAACAGGCGG AGCGCGGTCG GCGCGCTGCG CGAGCATTGC 
GCCGACGAGC TGAAGCGGCT GGAGATGCGT ATCGACGCGG GGCTGAACAA CCGTCTGCTC 
GAAGAGTACG AAAACGATCG CCGCAAGCGG CTGTATGCGT TGCCGCAGGA GTTCCGGAGC 
CTGTCGGCCG CGCTGTCGGA CATGCTCGCC CTCGTGTTTC TCGATTCACG CTACGACGAC 
GCCCAGTTGC AGAACACGCT GCGCGGCGTC TACTTCACGA GCGCCGAGCA GACGGATCAG 
GTATTGGCCG CGGATCGCGA AACCATCCTG CAGCGCTTGA AGCGCCAACT CGGCAGAATG 
CTCGGCGGCG ATGCCGGCGC GCAGACGCGT GACAGCGGCG CGGTGTCGGG CAGCCGCGGC 
TACTTCCTGC GCGATGTGTT CCAGCATGTG ATCGTGCCGG AGGCGCATCT GGTTCGGCCG 
AACGTCAGGT GGGAGGTGCG TTTTCGCCTG ATGCGCTGGG CCGGGCATCT GCTCGCCGTC 
GCATTGCTGG TCTGGCTGGC GAGCGCGCTG ACGGTGAGCT TCGACAACAA TCGCGGTTAC 
CTGGACGCGA TCTCGGAAAA GACAGCCGCG CTCGCCGCAC GAGTCAACGC GTACAACAAG 
GCGCCGAAGC CGGCGCAGAT CGGGGGCGTA CTGGATGGCG CGCGCGATCT TCCTCAGCAT 
GGCAATCTCG ATCTCGACGC GCCCGGCGCG AGCTTCCGCT ACGGCCTGTA TGTCGCACCC 
GGCATCGTCG ACGCGTCCGA CGCGACTTAT CGGAGCCTGC TGCGCCGGAG CCTTCTGCCG 
CAGATCGTGC GGCGCGTCGA GAATGCACTG AGCGCGCAAA TCGATGCGAA GCATGCGGAC 
GAGGTCTATC GCACGCTGAC GGTCTACTTG ATGCTCGACG ACGCCGCGCG CCATGACGCG 
AAGGCGGTGA AAGACTGGGT CATGCGCGAC TGGGAGCGCT CGGATAGCGC GGCCGAGATG 
GGGGGGCGCA ATTTGATGGC GCGGCACCTG GACGCGCTGT TCGTCGATGC TCGGCCTTTC 
GAGCCGAGCG GGCACCGGAA CGCCGCACTC GTTCAGCGCG CCCGGCTTTT CCTCAACGCG 
AACCCGGCCC CGAGGCGGCT GTACGAGCGT GCGATGGCCG CGATCGAGAA GGAGGCGCCG 
GAGAACTTCA CGCTCGCGCG TGCGGTCGGG CTTCAGGGCG CGGGCATCTT TCGGCTCGCC 
GACGGCTCGC GGTTTCAACG CGGGATGCCC GGCTTGTATA CGTACGATGG CTACCACCAG 
GTATTCAGCG TCCGGTTGCC CGAATTTCTC GCCCGTGCGC AAAGCGACGA CGCATGGGTG 
ATGGGGAACG CCGGCCCCGC CGCGCGATGG GGCGACGCGA TTCGGAACAC GCAGGCCGTT 
GCGGGTCGGT CTTCGCTTGC CGACGACATT CGTCGCCAGT ACCTGACGGA TTACGGCAAC 
TATTGGCAAC AGTATCTGGC GGACATTCGG CCCGCGTCGT CCGGAGAGGA CGGCGCGGGC 
GGCACGCTCG CATTCGATCT CGCGACGCTG CGCGCGCTCG CCGCCCCCGA TTCACCGCTC 
GTGAGACTGG CGCGCGCCGT CGTTCGCGAA ACATCGCTGT CGGTCGTCGA CGCACGGGAA 
GACGCGTCGT TGACCGACGC CGCGCTTTCG GCGCTCGGGC GACGATCCGG CGCGGCGAAG 
GAGGTTGCCG ACGGCGCGCA GAAACTGGCG GCGCGGCGGC CGGAGCAGCG CCTCGAGAAG 
GAAGTGGTGG ACAACCGCTT CGCGGCGCTG CGCGAGGTGG TGACGGGGCA GGCCGACACG 
GGAAGCGGGC CGGCGATGAC GGACGTGCCG GTCGCGGCGG GGGGCCGGGC GCTGCAGCTC 
GATGCGATCC TCACGCTGAT CAACGAACAG TACACGCGCC TCGTCGTTGC CGACAACGCG 
CTCTCGTCGC AGAGCATGCC GCCCGCGCTG GACATCGGCA CCACCTTGCA AATGGAGGCG 
GAGAAACTGC CCGCGCCGCT GCGCACGGTG CTGGGCGGCA TCGCGACGCA AGCCGCCGAC 
AAAGTCGGGC GCGAAGTGGG TTCGCTGCTC GCGATGCAGG TGGACTCGAG TGTCGGCAAC 
GCGTGTCGCG CCGCCGTCGA CGGCAAGTAT CCGTTCGCGC GCAGCGCGCA GGAAGTCGAC 
ATCGAGGATT TCAACCGCCT CTTCGCCGCG GGCGGCCTGT TCGACGCGTT TTTTCAGAAG 
GCGCTCGCGC CGCATGTCGA CACCCATTCG AAGCCGTGGC GTTACAAGGC GTTGAATCCC 
GGCATGCCGC CGATCCGGGG GCCGAGCCTC GAGCCGTTCG AGCGCGCCGC CGCGATTCGC 
GACGTGTTCT TTCGTGAACC GGGCGCAAAG CGGATGGCGT GGAAGATGGA TGCGAAGGTG 
GCGTCGATCG ACCCTGAGAT CACCGAGCTC ATCGTCGACG TCGACGGCCA GTCGCAGCGC 
TATGTCCACG GCCCCGTGCT GCCGTTCTCC GTGAACTGGC CCGGGCCGCG CGGCGGCGCG 
ATCGCCGAGA TCACCGCGAA GCCGCGGATT CGTCCCGATA CGTCGACGAT CGCGACGACG 
GGGCCCTGGG CGCTGTTTCG GCTGATCGAG CGCGGGCGGT TGACGGGCAC CACGTCGGCG 
AGCCGGTTGA TGCTGGATTT CGATTTCGAC GGTCGGCACG CGGCCCTGGA GCTCAGGACG 
AACGGCCAGA TGAATCCGTT GACGAGCGGC TTGCTGACGC ATTTTCGCTG TCCGGGGAGC 
GTCGGTTGA 

 

Protein sequence

MSYLKRFLRF VFSWQMLACI AVLLVCAAVW FVGPLLAFDE LRPLAGVVVR VAVIVLLVAL 
LAFWLLRWPL SPIGVAALCL LIWHAGPLFA FGDHRPFGPA WVRVLIVAAM LFCYAVYGLY 
RLWQAVRTND ALLKRILEPS AGKPDAAAQA NIRAVSVAVS KAIGQLKRLR GGAFGWRRLL 
ESGRYLYELP WYMVVGAPGA GKSAAIARSG LKFPLADQME ASSERARGGT ANCEWWFANE 
AVLIDTAGRY VRHEVPGDEE ATVANGAEWK GFLGLLRKHR PRAPVNGVVL SVSVEELVGR 
TPAERTAHAA TLRARLGELH QELGIHFPVY VIVTKLDLLP GFPEYFQSLT AEGRTQIWGF 
TLPYDAENRR SAVGALREHC ADELKRLEMR IDAGLNNRLL EEYENDRRKR LYALPQEFRS 
LSAALSDMLA LVFLDSRYDD AQLQNTLRGV YFTSAEQTDQ VLAADRETIL QRLKRQLGRM 
LGGDAGAQTR DSGAVSGSRG YFLRDVFQHV IVPEAHLVRP NVRWEVRFRL MRWAGHLLAV 
ALLVWLASAL TVSFDNNRGY LDAISEKTAA LAARVNAYNK APKPAQIGGV LDGARDLPQH 
GNLDLDAPGA SFRYGLYVAP GIVDASDATY RSLLRRSLLP QIVRRVENAL SAQIDAKHAD 
EVYRTLTVYL MLDDAARHDA KAVKDWVMRD WERSDSAAEM GGRNLMARHL DALFVDARPF 
EPSGHRNAAL VQRARLFLNA NPAPRRLYER AMAAIEKEAP ENFTLARAVG LQGAGIFRLA 
DGSRFQRGMP GLYTYDGYHQ VFSVRLPEFL ARAQSDDAWV MGNAGPAARW GDAIRNTQAV 
AGRSSLADDI RRQYLTDYGN YWQQYLADIR PASSGEDGAG GTLAFDLATL RALAAPDSPL 
VRLARAVVRE TSLSVVDARE DASLTDAALS ALGRRSGAAK EVADGAQKLA ARRPEQRLEK 
EVVDNRFAAL REVVTGQADT GSGPAMTDVP VAAGGRALQL DAILTLINEQ YTRLVVADNA 
LSSQSMPPAL DIGTTLQMEA EKLPAPLRTV LGGIATQAAD KVGREVGSLL AMQVDSSVGN 
ACRAAVDGKY PFARSAQEVD IEDFNRLFAA GGLFDAFFQK ALAPHVDTHS KPWRYKALNP 
GMPPIRGPSL EPFERAAAIR DVFFREPGAK RMAWKMDAKV ASIDPEITEL IVDVDGQSQR 
YVHGPVLPFS VNWPGPRGGA IAEITAKPRI RPDTSTIATT GPWALFRLIE RGRLTGTTSA 
SRLMLDFDFD GRHAALELRT NGQMNPLTSG LLTHFRCPGS VG