Gene BURPS1710b_A1598 details

Gene Information

• Locus tag: BURPS1710b_A1598
• Symbol: fimA4
• ID: 3692224
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: +
• Start bp: 1948636
• End bp: 1949181
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637731852
• Product: frimbrial protein
• Protein accession: YP_336755
• Protein GI: 76819245
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3539] P pilus assembly protein, pilin FimA

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.368495
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAAAGA AGGTCGTAAG TTTCGCCGTT GCGACATTGT TTGGCCTTGT CGCAGCGCAG 
AGCGTGTATG CACAGTCGAT CGATCAGGGG CAGGTCAAAT TCACGGGTGA GCTGACCGCC 
AACACGTGCA CGATCGACGC CGGCAGCAAA GACCAAATCG TTCCCTTGCC GAAAGTTTCC 
ACGAGCGCTC TGGCGGCGCC GGGAGATGTC GCTGGTTCGA CGGCCTTTGA AATCAAGGTG 
TCGAAGTGCG CTGCGGATGT CAAGAAGGTC GCCGCTCACT TCGAGATGGA AAACATGGAC 
CCCAACACGC GTACGTTGAA AAACGAGGCC ACGGGAGCGG ACGCCGCGAC GAACGTGACG 
ATTCAACTGG TCAACTCCGA TGGCACCGAA CTGCCGGTAG GTTCGACCGG TAGTTACTTC 
GACGTCACCG GAACCGACGA TGCTCGTGGG GCAACCATGA TCTATGGCGG CCAGTACTAC 
GCGTTGGATA CAACCACCGC GGGTAAGGTC GAGTCGCACA CGCTCTTCAC GCTTGCCTAC 
GAATAA 

 

Protein sequence

MKKKVVSFAV ATLFGLVAAQ SVYAQSIDQG QVKFTGELTA NTCTIDAGSK DQIVPLPKVS 
TSALAAPGDV AGSTAFEIKV SKCAADVKKV AAHFEMENMD PNTRTLKNEA TGADAATNVT 
IQLVNSDGTE LPVGSTGSYF DVTGTDDARG ATMIYGGQYY ALDTTTAGKV ESHTLFTLAY 
E