| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A1316 |
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| Symbol | cpaF1 |
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| ID | 3692247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007435 |
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| Strand | + |
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| Start bp | 1627518 |
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| End bp | 1628885 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637731570 |
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| Product | type II secretion system protein |
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| Protein accession | YP_336473 |
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| Protein GI | 76818351 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTGC GAGACCAGAT GTCCGTGCGG CGCGCGCAAC CGCTCATGTC CCGAAGCGAC
GCCATCGGCG CGGCCACCGC GATGGCGCGC GAAGCGTATC AGAAGCTGCG CCGCCAGATG
CACGGCGCGG TGCTCGAGCG CGTCGAGCTC GAACGCCTGT CGCGGCTGCC CGCCGAACAG
GTGCGCAACG AGATCGCGAC GCTGATCGCG CGCATTCTCG ACGAGGAGAA GCTGCTCGCG
AACGATCTCG AACGCCGCCA GTTGACGATC GACATCTACG ACGAAATGTT CGGCTTCGGC
CCGCTCGAAT CGCTGCTGCG CGACCCGAGC GTGTCGGACA TCCTCGTCAA CACGGCGAGC
GCCGTCTACG TCGAGCGCTA CGGCCGGCTC GAGCTGACCG ACGTGACGTT CTACGACGAC
GCGCACCTGA TGAAGGTGAT CGAGAAGATC GTCTCGCGCG TCGGCCGGCG CATCGACGAA
TCGAGCCCGA TGGTCGACGC GCGCCTGCCC GACGGCTCGC GCGTGAACGC GATCATCCCG
CCGTCCGCGA TCGACGGCCC GCTGATGTCG ATCCGCCGCT TCGCCGTCAA TCCGCTGAAG
ATGGACGATC TCGTCAACTT CCAGACGCTG ACGCCGCCGA TGGCGCAACT GCTCGAGGCG
CTCGCGCGCG CGAAGGTCAA CGTGCTCGTG TCGGGCGGCA CCGGCAGCGG CAAGACGACG
CTCCTGAACA TCCTGTCGGG CTTCATTCCG GACGACGAAC GGATCGTGAC GATCGAGGAC
GCGGCGGAGC TGCAGCTTCA ACAGCATCAC GTGCTGCGGC TCGAGACGCG CCCGCCGAAC
ATCGAGGGCA AGGGCGAGAT CACGCAGCGC ACGCTCGTGC GCAACGCGCT GCGCATGCGG
CCCGACCGCA TCATCCTCGG CGAAGTGCGC GGCGCGGAGG CGCTCGACAT GCTGAACGCG
ATGAACACCG GCCACGAAGG CTCGCTCGCG ACGATCCACG CGAACACGCC GCGCGACGCG
CTCACGCGGC TCGAGAACAT GATCGGCGTC GCGGGCCTCG CGCTGCCGCC GAAAACGATG
CGCCAGCAGA TCAGCTCGGC GCTGTCCGTC GTCGTGCAGA CCGCGCGGCT CACCGACGGC
AAGCGCAAAA TCGTCAGCAT CCAGGAGCTG ACCGGCATGG AGGGCGAGAT CATCAACATG
CAGGAGATCT TCACGTTCAA GCGCACCGGC CTCGACGCGA GCGGCAACGT GCTCGGCTAC
TTCACCGCGA CGGGCGTGCG GCCGAAGTTC ACCGAGCGCC TGACCGCGTT CGGCATCCAG
TTGCCCGACG CGATGTACGA CCCCGCGCGC CGCTTCGAAG TGGCGTAA
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| Protein sequence | MSLRDQMSVR RAQPLMSRSD AIGAATAMAR EAYQKLRRQM HGAVLERVEL ERLSRLPAEQ
VRNEIATLIA RILDEEKLLA NDLERRQLTI DIYDEMFGFG PLESLLRDPS VSDILVNTAS
AVYVERYGRL ELTDVTFYDD AHLMKVIEKI VSRVGRRIDE SSPMVDARLP DGSRVNAIIP
PSAIDGPLMS IRRFAVNPLK MDDLVNFQTL TPPMAQLLEA LARAKVNVLV SGGTGSGKTT
LLNILSGFIP DDERIVTIED AAELQLQQHH VLRLETRPPN IEGKGEITQR TLVRNALRMR
PDRIILGEVR GAEALDMLNA MNTGHEGSLA TIHANTPRDA LTRLENMIGV AGLALPPKTM
RQQISSALSV VVQTARLTDG KRKIVSIQEL TGMEGEIINM QEIFTFKRTG LDASGNVLGY
FTATGVRPKF TERLTAFGIQ LPDAMYDPAR RFEVA
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