Gene BURPS1710b_A1249 details

Gene Information

• Locus tag: BURPS1710b_A1249
• Symbol: oppF
• ID: 3692579
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: -
• Start bp: 1559753
• End bp: 1560886
• Gene Length: 1134 bp
• Protein Length: 377 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 637731503
• Product: oligopeptide ABC transport system ATP-binding protein OppF
• Protein accession: YP_336406
• Protein GI: 76818725
• COG category: [E] Amino acid transport and metabolism; [P] Inorganic ion transport and metabolism
• COG ID: [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; [COG4608] ABC-type oligopeptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCCG CGACCGATCT CATTTCTTCC ACTTCGTCGT TCGTATCGGT ATCGGCGGGC 
GCGCCGGGCG GCGGCGAGAC CTCCGGCGCC GATGCGCCCG GCGCCGACGC GCGCGGTGGC 
GGCGCATCGC CGCATGCCGA CGCGCTGCTG TCGGTGCGCG ATCTCAAGGT GCATTTCCGC 
GTGCCGCTCG GCGGCTATCC GTGGTCGCCC AAGGGCACGC TGCGCGCGGT CGACGGCGTG 
TCGTTCGACG TGAAGCGCGG CGAGACCGTC GGGCTCGTCG GCGAATCGGG CTGCGGCAAG 
TCGACGCTCG CTCGCGCGCT GATCGGCCTC GCGCCGGTGA CGGCGGGCAC CGTGCAGTGG 
CGCGGTGTGC CGATCGTGAG CAGCGCGCGG CGCGACGCGC GCAGGATCCG CCGCGAAATG 
CAGATGATCT TTCAGGATCC GCTCGCGTCG CTTGATCCGC GCATGACGAT CGAGCAGGTC 
GTCGCGGAGC CGCTCGTCAC GCACCAGCCG GGCATCGGCC GCGACGAAGT GCGCCGCCGC 
GTGCTGACGA TGCTCGAGCG CGTCGGCCTG AGCGCCCACC ACCTGCTTCG TTACCCGCAC 
GAATTTTCCG GCGGGCAGTG CCAGCGCGTC GGCATCGCGC GCGCGTTGAT CGGTGAGCCG 
CATCTCGTGA TCTGCGATGA GCCCGTGTCC GCGCTCGACG TGTCGATTCA GGCGCAGATC 
GTCAATCTGC TGCGCGACCT GCAACGCGAG CTTTCGCTGT CCTATCTGTT CGTCGCGCAC 
GATCTCGCGG TCGTCAAGGC GATCAGCCAG CGCGTGCTCG TGATGTATCT CGGCCGCGTG 
ATGGAGTTCG GCACGCGCCG CGAAGTGTAC GGCGCGCCGC AGCACCCGTA CACGCGCGCG 
CTGCTCGCCG CCGCGCCGAC GCCGGAGCCC GCGCGCGAGC GCGCGCGCCG GCCGCTGTTG 
CTCGCGAGCG AAATGCCTTC ACCGCTCGAT CCGCCGTCGG GGTGCGCGTT TCGCACGCGC 
TGCCCGGACG CGATCGACGC GTGCGCGCGC GAGGTGCCGC AGCCCGAAGT GCGCGGCGTG 
ACGGGCGCGC GCGTCGCGTG CATTCGCGCG GGCACGGGCG GTGCGGCGCG CTGA 

 

Protein sequence

MSAATDLISS TSSFVSVSAG APGGGETSGA DAPGADARGG GASPHADALL SVRDLKVHFR 
VPLGGYPWSP KGTLRAVDGV SFDVKRGETV GLVGESGCGK STLARALIGL APVTAGTVQW 
RGVPIVSSAR RDARRIRREM QMIFQDPLAS LDPRMTIEQV VAEPLVTHQP GIGRDEVRRR 
VLTMLERVGL SAHHLLRYPH EFSGGQCQRV GIARALIGEP HLVICDEPVS ALDVSIQAQI 
VNLLRDLQRE LSLSYLFVAH DLAVVKAISQ RVLVMYLGRV MEFGTRREVY GAPQHPYTRA 
LLAAAPTPEP ARERARRPLL LASEMPSPLD PPSGCAFRTR CPDAIDACAR EVPQPEVRGV 
TGARVACIRA GTGGAAR