Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_A1248 |
Symbol | |
ID | 3693690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007435 |
Strand | - |
Start bp | 1558135 |
End bp | 1559595 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637731502 |
Product | OprD family outer membrane porin |
Protein accession | YP_336405 |
Protein GI | 76819448 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACACAAC ATCGATCGAT GAAGAGGGTC GCGCGGGCGG TCGTGCTCGC GTGGGGACTG CCGATGCTCG CCGGCGTATC GATTGCCGGC GCCGCGCGCG CGGACGATGC GGCGCCCGCC GCGCCGGCTC AGGCGCCGTT AGCCGCGACG CTCGCGCAGC AGGCGACGAC GCCGAACGCG CTCGTCAATG CCGACGCCAC GCAGGCGGTG CTGCCGCAGC CGCCGATGTC GAGCCAGGCG AAATCGAAGG GCTTCATTGC CGACAGCCAT TTCGACGTGC TGTTGCGCAA TTACGCGGAC GTGCTCGATG CGAAGGGCGG GCCGCATCGT CACGCGTGGG TCCAGGGCGT GATGGCGAAC TTCGAGTCCG GCTATACGGG CGGGCTGATC GGCTTCGGCG TGGACGCGTC GATCTACGCG GCGCTGAAGC TCGACGGCGG CGCGGGCGGC GGCAACATGG TGCACGTCGC GAAGGGCGGC GGCGGCTCGA ACCAGCTCGC TTGGGCGTTC CCCGGCATCT ATGACGTGAA GGCGCGCATC TCGAACACCG TGATCAAGTA CGGCCTGCAG GCGGTCGACA ATCCGTTCAT GGAGCAGCAC GACAACCGCG CGCTGCCGCC GACGTTCCTC GGCGCGACGA TCGTGAGCAA CGAATTCAAG AACGTGATGC TCGAGGCGGG CAGCTTCACG AAGACCAACG CGCGCGGCCA TACGACGCTC ACGAACCTGA CGACGCAATA CGGCGGCACG CGCGTCGACC GCTTCACGTA CGTCGGCGGC ACGTGGGATT ATTCGCAGAC GGGCTCGGCG TCGTTCTACG CGGGCCAGGC CGACGATGTC TGGCGCCAGT ACTACGGCTC GGTCAAGCAA AGCTACGGCT CGCCGCAGAC GGTCAAGTGG ACGGGCTTCG GCAATTTCTA TTCGACGCAC GACACGGGCG ACGCGCGCCA GGGCAAGATC GACAACAACG CGTACAGCCT GTCGCTCGCC GCGCAGCACG GCCCGCACGA GCTGCTGCTC GGCTATCAGC AGGTGCTCGG CGACCAGTTC TTCGATTACC TGAACGAAAC GAACGGCATC TTCCTCGTCG ATTCGATGGA CGTCGACTAC AACGCGCCGC ACGAGAAATC GCTGCAACTG CGCTACACGT TCTACGGCAA GGAGGCGGGC CTGCCCGGCT TCAAGGCGAT GGTGTGGGGC GTGACAGGCT GGGGGGCGGA CGGCTCCGCG AGCGCGGCGC TCGATCCGAC GCGCTCGAGC ATCTACTGGA AGGACGGCGC GCCGGTGCAG GGCCGCCATC ACGAGTTCGG CTTCATCCCG TCGTATACGA TCCAGAGCGG CAAGCTCAAG GACACGAAGA TCACGTTCAT CGCGATGTGG CACGTGGGTT CGGCGCACTA CTCGGACAGC ACCAACCAGG AATACCGGCT GGTCGTGAAC GTGCCGGTGA AGGTGTTCTA A
|
Protein sequence | MTQHRSMKRV ARAVVLAWGL PMLAGVSIAG AARADDAAPA APAQAPLAAT LAQQATTPNA LVNADATQAV LPQPPMSSQA KSKGFIADSH FDVLLRNYAD VLDAKGGPHR HAWVQGVMAN FESGYTGGLI GFGVDASIYA ALKLDGGAGG GNMVHVAKGG GGSNQLAWAF PGIYDVKARI SNTVIKYGLQ AVDNPFMEQH DNRALPPTFL GATIVSNEFK NVMLEAGSFT KTNARGHTTL TNLTTQYGGT RVDRFTYVGG TWDYSQTGSA SFYAGQADDV WRQYYGSVKQ SYGSPQTVKW TGFGNFYSTH DTGDARQGKI DNNAYSLSLA AQHGPHELLL GYQQVLGDQF FDYLNETNGI FLVDSMDVDY NAPHEKSLQL RYTFYGKEAG LPGFKAMVWG VTGWGADGSA SAALDPTRSS IYWKDGAPVQ GRHHEFGFIP SYTIQSGKLK DTKITFIAMW HVGSAHYSDS TNQEYRLVVN VPVKVF
|
| |