| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A1193 |
|---|
| Symbol | |
|---|
| ID | 3694181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007435 |
|---|
| Strand | - |
|---|
| Start bp | 1496460 |
|---|
| End bp | 1498655 |
|---|
| Gene Length | 2196 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637731447 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_336350 |
|---|
| Protein GI | 76817766 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.598361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTCACAC TCGACAGCCT GCACGGCGAC GACCTGAAGT TCCACCGGCT CTACGGCGAG
GAAGCGCTCG GGCGGATGTT CGACTTCCGG ATCGAAGCGC TCGCCGACAA TCACAGCCTG
TCGCTGAAGG AACTGCTCGG CAAGCCGGTG ACGGTGCGCA TCCGGCAGCA GGACGAATCG
GAGCGCCATC TGAACGGGAT CGTCGCGCGC GCCGCGCTGG TCGGGCGGCG CGCGGAGCGG
CATTACGGCT ATCAACTGAT CGTGCGGCCG TGGCTGTGGC TCGCGACGCG CCGCTCCGAT
TGCCGGATCT TCCAGAACAA GACGGTGCCG GAAATCGTGC AGGACGTGCT CGGCACGTAC
GGCTTTCCGA TCGAAAACCA TCTGACCGAC ACGTACGCGC CGCGCGACTA CTGCGTGCAG
TACAACGAGA CCGACGCGGC GTTCGTGTCG CGGCTGATGG AGTTCGAAGG GATCTACTAC
TACTTCAAGC ACGCCGCGCA AACGCACACG CTGATGCTGT GCGACGCGAT GGCGTCGCAC
GTCGCGCTGC CGGGCTACGA GCACATTCCG TTCATCGCGC GCGACCGCAC CGCGATCGCC
GACGAAGAGC ACATCGACAG CTGGCTGCCC GCGCAGGAAG TGAGCATCGG CAAGCACGAG
ACGAGCGACT ACGACTACAC GAAGCCGCGC GCGGATCTGT CCGCGCAGAA GATCGATCCG
CGCGGCCACG ACCATGACGG CTTCGCGTCG TTCGAATGGC CCGGCGGCTA TCGCGACGAT
GAACCGGGCG CGCATTACAG CCGCGTGCGG CTCGAAGAGC AGCAGGCGGA GCACGAACGC
GCGCTCGCGC GCACCGACGT GCGCGGCATC GCACCCGGCT ATCTGTTCAC GCTCGAACAC
TGCCCGCGCG CCGACCAGAA CCGCGAATAC CTGATCGTGC GTTGCCAGTA TCGGTTTCAG
GAGAACGCGT ACGCGACCGA TAGCGGCAAC GAGGCGGTCG TGCACGAATC TCAGACACTC
GTGCAGCCTT CGAGCCTGCC GTATCGCTCG CCGCGCGCGA CGCCGCGGCC GCGCACGAAC
GGCCCGCAGA CGGCGACCGT CGTCGGCCCG AAGGGCGAGG AAATCTGGAC GGACCAGTAC
GGGCGCGTGA AGCTGCAATT TCGCTGGGAC CGCTACGGGC AGAGCGACCA GAACTCGTCG
TGCTGGGTGC GCGTGTCGAG CCCGTGGGCG GGCGGCGGCT TCGGCGGCGT GCAGATCCCG
CGCATCGGCG ATGAGGTGGT GGTCGATTTC CTGAACGGCG ACCCCGATCA GCCGATCGTG
ACGGGGCGCG TGTACAACGG CGAGAAGATG CCGCCATGGG GGCTGCCCGG CAGCGCGACA
CAAAGCGGGC TGCTGTCGCG CTCGTCGCCG GGCGGCACGG CCGAGCATTC GAACGCGTTT
CGCTTCGAGG ACAAGAAGGG CGCGGAGCAG CTGTGGATGC ATGCGGAGCG CAACTTCGAC
GCGGAGACTG AGCAGGACCA CACGCTGTCG GTGGGCCACG ATCATTCGCA TTCGGTCGGC
AACAACGAGA TGATGAGCGT CGCGAACGAC CGGCAAAGGA GCGTCGGGCA GAACGAGACG
GTGAACATCG GGAAACATCG CGTCGCGCAG ATCGGCGGGA ACGAGACGCA TGGCGTCGCG
GGAAACCGCA CGCGGCAGGT CGGACAGAAC GAAGCCGTGA CGATCGGCGC GAATCGCGAG
GCGACGATCG GCGGCAATCA CGTGGAGACG GTCGCGAAAG ACAAGACCGA AACGATTGGG
CAGGGCAAGA CGCTGAATGT CACTCAGCAC TATCAGACGA CTTCGAAGAG CATGAAGACC
GCTGTCGCCG AACATCACGC CGAGGAGATC GGCTCGCGAA CGTCGACGAT CGAGAAAGCG
CACGAGCTCA ACGTTGGCGG TTCTCAATCG GTGAACGTTG GCGCGAGCCA CACGATGAGC
GTGAAGAACA ACGTACATGT CGGCGCGGGC GATCAGATCT CGCTCGTTTG CGGCGATGCG
AGCATCACGC TGAAGAAGGA CGGCACGATC GCGATCAACG GCGTCACGGT GGAATCGAGC
GCCAGCGGAA GCCATAGCGT GCGCGGCAAG ACAGTGACGT CGTCGGCGAC GGGCGAGCAC
ACGGTGGAAG GCACGATACT GAAACTGAAC CCCTGA
|
|---|
| Protein sequence | MFTLDSLHGD DLKFHRLYGE EALGRMFDFR IEALADNHSL SLKELLGKPV TVRIRQQDES
ERHLNGIVAR AALVGRRAER HYGYQLIVRP WLWLATRRSD CRIFQNKTVP EIVQDVLGTY
GFPIENHLTD TYAPRDYCVQ YNETDAAFVS RLMEFEGIYY YFKHAAQTHT LMLCDAMASH
VALPGYEHIP FIARDRTAIA DEEHIDSWLP AQEVSIGKHE TSDYDYTKPR ADLSAQKIDP
RGHDHDGFAS FEWPGGYRDD EPGAHYSRVR LEEQQAEHER ALARTDVRGI APGYLFTLEH
CPRADQNREY LIVRCQYRFQ ENAYATDSGN EAVVHESQTL VQPSSLPYRS PRATPRPRTN
GPQTATVVGP KGEEIWTDQY GRVKLQFRWD RYGQSDQNSS CWVRVSSPWA GGGFGGVQIP
RIGDEVVVDF LNGDPDQPIV TGRVYNGEKM PPWGLPGSAT QSGLLSRSSP GGTAEHSNAF
RFEDKKGAEQ LWMHAERNFD AETEQDHTLS VGHDHSHSVG NNEMMSVAND RQRSVGQNET
VNIGKHRVAQ IGGNETHGVA GNRTRQVGQN EAVTIGANRE ATIGGNHVET VAKDKTETIG
QGKTLNVTQH YQTTSKSMKT AVAEHHAEEI GSRTSTIEKA HELNVGGSQS VNVGASHTMS
VKNNVHVGAG DQISLVCGDA SITLKKDGTI AINGVTVESS ASGSHSVRGK TVTSSATGEH
TVEGTILKLN P
|
|---|
| |