| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A0680 |
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| Symbol | sctU |
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| ID | 3694226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007435 |
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| Strand | - |
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| Start bp | 877760 |
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| End bp | 878959 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637730934 |
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| Product | type III secretion system protein HrcU |
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| Protein accession | YP_335839 |
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| Protein GI | 76819722 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0663628 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAGCA CGGCGCGCGC TTCGCATCCG GCGGCGCGGC TTCGGCTCGG CGCGCGCGCG
GCGCGCGGCG CGCCGCTAAC GTACGCGGCA TCTCCGACTC CCGAAGGAAA CGCGGCGATG
GCCGAAGAGA AAACCGAAGA GCCCACCGAG AAGAAGCTGA AGAAGGTGCG CGAGAAGGGC
CAGGTCGCCA AGAGCAAGGA CATCGCCGAC GCGATGACGC TCGCGGCCGC GATCGGCGTG
CTCACGGCGT GCGAATCGAT GCTCACGGGC GGCCTCTCGC GCGCGGTTCG CACCGCGCTC
GACTTCGTGC GCGGCGAGCG CACCCCGCAG GCGACGCTCG CCGCGCTGCA CGATCTCGCC
GCGAGCGCCG TGCTGACGAT GCTGCCGTTC GTCGCCGCCG CGATCGTCGC GGGCATCGTG
TCGCAGGCGC CGCAGGCGGG CTTCCTGATC ACGCTCGAGC CCGTGATGCC GAAGTTCGAC
GCGATCAATC CGATGGCGGG CATCAAGCGG ATCTTCTCGC TGAAGTCGCT GCTCGAGCTC
GTGAAGATGA TCGTCAAGGC GCTCGTGCTC GCGTGCGTGG CATGGAAGAT GATGACCTCG
CTGTTTCCGC TCGTCGTCGC GAGCGTGTAC GAAGCGACGC CGCAGCTCGC GCGCGTGCTG
TGGACGGTGC TGATGAAGCT GCTCGGCACC GTGTCGGTCG TCGTCGCGGT GCTCGCGGCG
GCCGATTACA AGATCGCACG CGTGATGTTC GTTCGCGAGA ACCGGATGAC GAAGGAGGAA
GTCAAGCGCG AGCACAAGGA GAGCGACGGC GATCCGCACA CGAAGGGCGA GCGCCGCCGG
CTCGCGCGCG AGATTGCGAC GAGCGCGCCG CCGCGGCAGC GGGTCGGCCA GGCGAACGTG
CTCGTCGTCA ACCCGACGCA CTACGCGGTC GCGATCCGCT ATGCGCCCGA CGAGCATCCG
CTGCCGCGGG TCATCGAGAA GGCCGTCGAC GACGGCGCGC TCGCGCTGCG CCGCCACGCG
CACGCGCTCG GCGTGCCGAT CGTCGGCAAT CCGAGCGTCG CGCGCGCGCT GTACCGCGTC
GAGCGCGACG CGTCGATTCC CGAAGAGCTG TTCGAGACGG TGGCCGCGAT CCTGCGCTGG
GTCGAGTCCC TCTCGGGCGC GCGCGCGGTC GCCGCCGTTT CCTCCGCGAG GTCGTCATGA
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| Protein sequence | MRSTARASHP AARLRLGARA ARGAPLTYAA SPTPEGNAAM AEEKTEEPTE KKLKKVREKG
QVAKSKDIAD AMTLAAAIGV LTACESMLTG GLSRAVRTAL DFVRGERTPQ ATLAALHDLA
ASAVLTMLPF VAAAIVAGIV SQAPQAGFLI TLEPVMPKFD AINPMAGIKR IFSLKSLLEL
VKMIVKALVL ACVAWKMMTS LFPLVVASVY EATPQLARVL WTVLMKLLGT VSVVVAVLAA
ADYKIARVMF VRENRMTKEE VKREHKESDG DPHTKGERRR LAREIATSAP PRQRVGQANV
LVVNPTHYAV AIRYAPDEHP LPRVIEKAVD DGALALRRHA HALGVPIVGN PSVARALYRV
ERDASIPEEL FETVAAILRW VESLSGARAV AAVSSARSS
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