Gene BURPS1710b_A0648 details

Gene Information

• Locus tag: BURPS1710b_A0648
• ID: 3692442
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: -
• Start bp: 846941
• End bp: 848746
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637730902
• Product: YscC/HrcC family type III secretion outer membrane protein
• Protein accession: YP_335807
• Protein GI: 76819172
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.778085
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGCCA AGATTCCCGT TTTGCTGTCC CTGCTGTGCT CGCTCGCGAG CCTTTCCGTC 
GACGCCGCGC CGATCCGCTG GCGCAGCGCC GACATCCAGT ACGCGGCCGA GGGCAAGGAC 
GTGAAGGACG TGCTGCGCGA TTTCGCCGCG AGCCAGAACA TCGCGGCGAA CGTCGCGTCC 
GGCGTGAGCG GCGCGGTGAG CGGCAAGATG AAGATGTCGC CGCAGCGCTT TCTCGACACG 
CTCGCCGCGT CGTTCGGCTT TGTCTGGTAT TACGACGGCA CCGTGCTGTA CGTGACGCCC 
GCGAGCGACA TGAAGAGCAC GCTCGTCAAG CTCGATCACG CGAACACGGG CGACCTGCGC 
GACCTGCTCG AGCAGATGAA GGTCTCCGAT TCGCGCTATC CGATCACCTA CAACGCGCAG 
CAGCGCACCG CGCTCGTCGC GGGGCCGGCG CGCTACGTCG AGCTCGTGAC GAGCGTCGCC 
GCGCGGCTCG ACGAGAATTC CGCGCGCACG GGCGGCACGC AGATCCGCGT GTTCTCGCTG 
AAGCACGCAT GGGCCGCGGA TCGCGACGTG AACGTCGACG GCACGGCGGT ATCGATGCCG 
GGCGTGGCTT CGCTGCTGAA CCGGATGTAT CACCCGGGCG AAGGCAAGCG CGCATCGCAG 
ACGACGCTCG GCAAGCCGAT CAGCCGCGCC GCGCCGATGA CGGATCTCGG CGGCGGGCGC 
AGCGGCGTGC CGCCGCCGCC GCTGCCGCCG TACATGCAGG CCGCGCAGTC GGGCGACGGC 
GCGGCCATGC CGGCGGGCGT GCCCGGCGTG CCCGGCGGCG ATCCGCGCCC GAGCGGCATG 
GTCGCCGCCG CGATCGCGAA TCCGGGCGCG GCGCGCGCGC CGGGCGGCGG GATGCCCGAT 
GCGAACGGCG TGCCCGCCGG CGCGGGCGAC GCGGCGGATC TGCCGGTGAT CCAGGCCGAT 
CCGCGCACGA ACTCGATCCT CGTGCGCGAC GTGCCCGAGC ACATGGCGCA GTATCCGGAC 
CTGATCGCGC TCCTCGACGT GAAGCCGCGC CTGATCGAGA TCGAGGCGCG CATCATCGAG 
ATCGACGAAG GCGCGCTCAA GCAGCTCGGC GTCGACTGGC GCGCGCACAA CAGCCATTTC 
GACCTGCAGA CGGGCACGGG GCTCACGTCG CAGAACGGCT ATGCGAACGG CACGCTGAAC 
CCCACGTTCG GCTCGATCAC GCTCTCCGGC AACGATTCGG TCGGCGTGCC GGCGAGCCCG 
CTCGGGCTGT CGCTGACGGC CGTGCTCGGC GACGCCGGCC GCTATCTGCT CGCGCGGATC 
AACGCGCTCG AATCGTCGAA CCAGGCGCGC ACCGACGCGA GCCCGAAGGT CACGACGCTC 
GACAACGTCG AGGCGGTGAT GGACAACAAG AAGCAGTTCT TCGTGCGCGT GGCGGGCTAC 
ACGTCGGCCG ACCTGTACAG CATCTCGACG GGCGTGTCGC TGCGCGTGCT GCCGATGGTC 
GTCGACGAAG GCGGGCGCAC GCAGATCAAG CTCGACGTGC GGATCGTCGA CGGCGAGCTG 
TCGCAGCAGA CGGTCGACAA CATTCCGGTG ATCGTGTCGA ACGAGATCAA CACGCAGGCG 
TTCATCGAGC AGGGGCAGGC GTTGCTGATC GCGGGCTACA AGGTGGATGC GCGCTCGAGC 
ACGCAATCGG GGGTGCCGGT GCTGTCGAAG CTGCCGCTCG TCGGCGCGCT GTTTCGTTCG 
ACCGACAAGC AGAACAGCCA CAGCGAGCGG CTCTTTCTCG TGACGCCGAG AGTGATCGAG 
CCTTGA 

 

Protein sequence

MKAKIPVLLS LLCSLASLSV DAAPIRWRSA DIQYAAEGKD VKDVLRDFAA SQNIAANVAS 
GVSGAVSGKM KMSPQRFLDT LAASFGFVWY YDGTVLYVTP ASDMKSTLVK LDHANTGDLR 
DLLEQMKVSD SRYPITYNAQ QRTALVAGPA RYVELVTSVA ARLDENSART GGTQIRVFSL 
KHAWAADRDV NVDGTAVSMP GVASLLNRMY HPGEGKRASQ TTLGKPISRA APMTDLGGGR 
SGVPPPPLPP YMQAAQSGDG AAMPAGVPGV PGGDPRPSGM VAAAIANPGA ARAPGGGMPD 
ANGVPAGAGD AADLPVIQAD PRTNSILVRD VPEHMAQYPD LIALLDVKPR LIEIEARIIE 
IDEGALKQLG VDWRAHNSHF DLQTGTGLTS QNGYANGTLN PTFGSITLSG NDSVGVPASP 
LGLSLTAVLG DAGRYLLARI NALESSNQAR TDASPKVTTL DNVEAVMDNK KQFFVRVAGY 
TSADLYSIST GVSLRVLPMV VDEGGRTQIK LDVRIVDGEL SQQTVDNIPV IVSNEINTQA 
FIEQGQALLI AGYKVDARSS TQSGVPVLSK LPLVGALFRS TDKQNSHSER LFLVTPRVIE 
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