| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_3785 |
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| Symbol | rpoC |
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| ID | 3689637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007434 |
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| Strand | - |
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| Start bp | 4110914 |
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| End bp | 4115152 |
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| Gene Length | 4239 bp |
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| Protein Length | 1412 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637730240 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_335149 |
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| Protein GI | 76809440 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.468466 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCTT TGCTCGATCT ATTCAAGCAA GTCCAACAAG AAGAAATTTT TGACGCGATC
AAGATCGGTC TGGCCTCGCC GGACAAGATC CGCTCGTGGT CGTTCGGCGA AGTGAAGAAG
CCGGAAACGA TCAACTACCG CACGTTCAAG CCCGAGCGCG ACGGTTTGTT CTGCGCGAAG
ATCTTCGGCC CGATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTC GAAGTGACGC TCGCGAAGGT GCGCCGTGAG
CGAATGGGCC ACATCGAGCT CGCGTCGCCG GTCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCATGGT GCTCGACATG ACGCTGCGCG ACATCGAGCG CGTGCTGTAC
TTCGAAGCAT ACGTGGTGAT CGACCCGGGC ATGACGCCGC TGAAGGCGCG TCAGATCATG
ACCGAAGAGG ATTACTACAA CAAGGTCGAG GAATACGGCG ACGAATTCCG CGCCGAGATG
GGCGCGGAAG GCGTGCGCGA GCTGCTGCGC TCGATCAACA TCGACGAGCA GGTCGAGACG
CTGCGCACCG AGCTGAAGAA CACCGGCTCG GAAGCGAAGA TCAAGAAGTA CGCGAAGCGC
CTGAAGGTGC TCGAGGCGTT CCAGCGTTCG GGCATCAAGC CCGACTGGAT GATCCTCGAA
GTGCTGCCGG TGCTGCCGCC GGAGCTGCGT CCGCTCGTGC CGCTCGACGG CGGCCGTTTC
GCGACGTCGG ATCTGAACGA CCTGTACCGC CGCGTGATCA ACCGGAACAA CCGTCTGAAG
CGTCTGCTCG AGCTGAAGGC GCCGGAGATC ATCGTGCGCA ACGAGAAGCG CATGCTGCAG
GAAGCCGTCG ACTCGCTGCT CGACAACGGC CGCCGCGGCA AGGCGATGAC GGGTGCGAAC
AAGCGTCCGC TGAAGTCGCT CGCCGACATG ATCAAGGGCA AGGGCGGCCG CTTCCGTCAG
AACCTGCTCG GCAAGCGCGT CGACTATTCG GGCCGTTCGG TGATCGTGGT CGGCCCGACG
CTGAAGCTGC ACCAGTGCGG TTTGCCGAAG CTGATGGCGC TCGAGCTGTT CAAGCCGTTC
ATCTTCAACA AGCTCGAAGT GATGGGCGTC GCGACGACCA TCAAGGCGGC GAAGAAGGAG
GTCGAGAACC AGACGCCGGT GGTGTGGGAC ATCCTCGAAG AGGTGATCCG CGAGCATCCG
GTGATGCTCA ACCGTGCGCC GACGCTGCAC CGTCTCGGCA TCCAGGCATT CGAGCCGGTG
CTGATCGAAG GCAAGGCGAT CCAGCTGCAC CCGCTCGTCT GCGCGGCGTT CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTTCACGTG CCGCTGTCGC TCGAAGCGCA GATGGAAGCG
CGCACGCTGA TGCTCGCGTC GAACAACGTG CTGTTCCCGG CGAACGGCGA TCCGTCGATC
GTGCCGTCGC AGGATATCGT GCTGGGTCTG TACTACGCGA CCCGCGAAGC GATCAACGGC
AAGGGCGAAG GCCTTTCGTT CACCGGCGTG TCGGAAGTGA TCCGCGCGTA CGAGAACAAG
GAGGTCGAGC TCGCGTCGCG CGTGAATGTG CGGATCACCG AAATGGTCCG CAACGAGGAT
ACGTCCGAAG GCGCGCCGCA GTTCGTGCCG AAGATCTCGC TGTACGCGAC GACCGTCGGC
CGCGCGATCC TGTCGGAGAT CCTGCCGCCG GGCCTGCCGT TCTCGGTGCT GAACAAGCCG
CTGAAGAAGA AGGAAATCTC GCGCCTCATC AACACCGCGT TCCGCAAGTG CGGCCTGCGC
GCGACCGTCG TGTTCGCCGA TCAGCTGATG CAGTCGGGCT TCCGTCTCGC GACGCGTGCC
GGCATCTCGA TCTGCGTCGA CGACATGCTC GTGCCGACGC AGAAGGAAAC GATCGTCGGC
GACGCCGCGA AGAAGGTGAA GGAGTACGAC CGCCAGTACA TGTCGGGTCT CGTCACCGCG
CAGGAACGCT ACAACAACGT GGTCGACATC TGGTCGGCGA CGTCGGAAGC GGTCGGCAAG
GCGATGATGG AGCAGCTGTC GACCGAGCCG GTGATCGATC GCGACGGCAA CGAGACGCGC
CAGGAATCGT TCAACTCGAT CTACATGATG GCCGACTCGG GCGCCCGGGG TTCGGCGGTG
CAGATTCGTC AGCTGGCCGG CATGCGCGGC CTGATGGCGA AGCCGGACGG CTCGATTATC
GAGACGCCGA TTACCGCGAA CTTCCGCGAA GGCCTGAACG TGTTGCAGTA CTTCATCTCG
ACCCACGGCG CACGTAAGGG CCTGGCGGAT ACGGCACTGA AGACCGCGAA CTCGGGCTAC
CTGACGCGTC GTCTCGTCGA CGTGACGCAG GATCTCGTCG TCGTCGAGGA CGATTGCGGC
ACGTCGAACG GCGTCGCGAT GAAGGCGCTC GTCGAAGGCG GTGAAGTCGT CGAAGCGCTG
CGCGACCGTA TTCTCGGCCG CGTCGCGGCA TCGGACGTCG TCAACCCGGA AACGCAGGAA
ACCCTGTACG AAGCCGGCGC GCTTCTCGAC GAAACCGCGG TGGAGGACAT CGAGCGCCTC
GGTATCGACG AAGTGCGCGT GCGCACGGCG CTTACCTGCG AGACGCGCTA CGGTCTGTGC
GCGTCGTGCT ACGGCCGCGA TCTCGGCCGC GGCTCGCTCG TGAACGTCGG CGAAGCGGTC
GGCGTGATCG CGGCGCAGTC GATCGGCGAG CCGGGCACGC AGCTGACGAT GCGTACGTTC
CACATCGGCG GCGCGGCGTC GCGGGCGGCG GTGGCTTCGT CGGTCGAGGC GAAGAGCAAC
GGCACGGTGC GCTTCACGGC GTCGATGCGC TACGTGACGA ACGCGAAGGG CGAGCAGATC
GTCATCTCGC GTTCGGGCGA GGCGCTCATC ACCGACGATA TCGGCCGCGA GCGCGAACGT
CACAAGATCC CGTACGGCGC GACGCTGCTG CAGCTCGACG GTGCGGCGAT CAAGGCCGGC
ACGCAACTCG CGACGTGGGA TCCGCTCACG CGCCCGATCA TCACCGAGTA CGGCGGTACG
GTGAAGTTCG AGAACGTCGA GGAAGGCGTG ACGGTCGCCA AGCAGATCGA CGACGTGACG
GGCCTGTCGA CGCTCGTCGT GATCGACGTG AAGCGCCGCG GTTCGCAGGC GGCGAAGAGC
GTGCGTCCGC AGGTGAAGCT GCTCGACGCG AACGGCGACG AAGTGAAGAT CCCGGGCACG
GAGCACGCGG TGCAGATCGG CTTCCAGGTC GGCGCGCTGA TCACCGTGAA GGACGGCCAG
CAGGTGCAGG TGGGTGAAGT GCTCGCACGT ATCCCGACCG AATCGCAGAA GACCCGCGAC
ATTACCGGCG GTCTGCCGCG CGTGGCCGAG CTGTTCGAAG CGCGTTCGCC GAAGGATGCG
GGCATTCTCG CGGAAGTCAC GGGCACGGTG TCGTTCGGCA AGGACACGAA GGGCAAGCAG
CGTCTCGTCA TCACGGATCT CGAGGGCAAC CAGCACGAGT TCCTGATCGC GAAGGAAAAG
CAGGTGCTCG TCCACGACGG TCAGGTCGTC AACAAGGGCG AAATGATCGT GGACGGCCCG
GCCGATCCGC ACGACATCCT GCGTCTGCAG GGGATCGAGG CGCTGTCGCG CTACATCGTC
GACGAAGTGC AGGACGTGTA CCGTCTGCAG GGCGTGAAGA TCAACGACAA GCACATCGAA
GTGATCGTGC GTCAGATGCT GCGCCGTGTG CAGATCGTCG ACAATGGCGA TACGCGCTTC
ATTCCGGGCG AGCAGGTCGA GCGTTCGGAC ATGCTGGACG AGAACGACCG CATGATCGCC
GAAGACAAGC GTCCGGCGAC GTACGACAAC ATCCTGCTGG GTATCACGAA GGCGTCGCTG
TCGACCGATT CGTTCATCTC CGCGGCATCG TTCCAGGAAA CGACCCGCGT GTTGACCGAA
GCGGCGATCA TGGGCAAGCG CGACGATCTG CGCGGCCTGA AGGAAAACGT GATCGTCGGC
CGTCTGATCC CGGCCGGTAC GGGTCTCGCG TTCCACAAGG CGCGCAAGGC GAAGGAGCAA
TCCGATCGCG AGCGCTTCGA CCAGATCGCA GCGGAAGAAG CGTTCGAGTT CGGCACGCCG
AGCGCGCCCG CCGAAGAGCC GCAGCACCCG GCGGAGTAA
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| Protein sequence | MKALLDLFKQ VQQEEIFDAI KIGLASPDKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELASP VAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAYVVIDPG MTPLKARQIM TEEDYYNKVE EYGDEFRAEM
GAEGVRELLR SINIDEQVET LRTELKNTGS EAKIKKYAKR LKVLEAFQRS GIKPDWMILE
VLPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELKAPEI IVRNEKRMLQ
EAVDSLLDNG RRGKAMTGAN KRPLKSLADM IKGKGGRFRQ NLLGKRVDYS GRSVIVVGPT
LKLHQCGLPK LMALELFKPF IFNKLEVMGV ATTIKAAKKE VENQTPVVWD ILEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAFNAD FDGDQMAVHV PLSLEAQMEA
RTLMLASNNV LFPANGDPSI VPSQDIVLGL YYATREAING KGEGLSFTGV SEVIRAYENK
EVELASRVNV RITEMVRNED TSEGAPQFVP KISLYATTVG RAILSEILPP GLPFSVLNKP
LKKKEISRLI NTAFRKCGLR ATVVFADQLM QSGFRLATRA GISICVDDML VPTQKETIVG
DAAKKVKEYD RQYMSGLVTA QERYNNVVDI WSATSEAVGK AMMEQLSTEP VIDRDGNETR
QESFNSIYMM ADSGARGSAV QIRQLAGMRG LMAKPDGSII ETPITANFRE GLNVLQYFIS
THGARKGLAD TALKTANSGY LTRRLVDVTQ DLVVVEDDCG TSNGVAMKAL VEGGEVVEAL
RDRILGRVAA SDVVNPETQE TLYEAGALLD ETAVEDIERL GIDEVRVRTA LTCETRYGLC
ASCYGRDLGR GSLVNVGEAV GVIAAQSIGE PGTQLTMRTF HIGGAASRAA VASSVEAKSN
GTVRFTASMR YVTNAKGEQI VISRSGEALI TDDIGRERER HKIPYGATLL QLDGAAIKAG
TQLATWDPLT RPIITEYGGT VKFENVEEGV TVAKQIDDVT GLSTLVVIDV KRRGSQAAKS
VRPQVKLLDA NGDEVKIPGT EHAVQIGFQV GALITVKDGQ QVQVGEVLAR IPTESQKTRD
ITGGLPRVAE LFEARSPKDA GILAEVTGTV SFGKDTKGKQ RLVITDLEGN QHEFLIAKEK
QVLVHDGQVV NKGEMIVDGP ADPHDILRLQ GIEALSRYIV DEVQDVYRLQ GVKINDKHIE
VIVRQMLRRV QIVDNGDTRF IPGEQVERSD MLDENDRMIA EDKRPATYDN ILLGITKASL
STDSFISAAS FQETTRVLTE AAIMGKRDDL RGLKENVIVG RLIPAGTGLA FHKARKAKEQ
SDRERFDQIA AEEAFEFGTP SAPAEEPQHP AE
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