Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_3628 |
Symbol | |
ID | 3688352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007434 |
Strand | + |
Start bp | 3951422 |
End bp | 3952861 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637730083 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_334993 |
Protein GI | 76810995 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.93917 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCCCG CACGCACCCT CGCCATGGCC GGCGCGCTCG CGCTCTTCGC ATCGCAAGCG ACGCACGCGC AATGGCTCGA TCTCTACGGA ACCCGAAAGA ATGTGTCGGC TTCTCCCGCC GCGCCGATGC TGAAGAACGC GACATGCCAG CCCGAGCTCG CGGACCGTCC GATCGAGCTC GAAGACGCGA TCCTGCAGGC GATCTGCGCG AACCCGCAGG CACGGCGCGC GTGGGCCGAT GCGCGCGCGC AGGCCGCCCA GCTCGGCGTG AAGGAGGCGG CGTATCTGCC GACGCTCAAT GCAACAGCGG GCATTCAGCG CAACTGGCAA ACGACGACGT ATGAGCAGGA CCTCGGCCCG ATCACGCTCA CCGCCGACCA GAAGCAGATC CAGACGAGCC GCTACGGCGC GTTGAACCTG AGCTGGGTGC TGTTCGATTT CGGCAAGCGC AGCGCGGCGC TCAGGCAGGC GCGCGAGCTC CTCGCCGCCG CCAACGCGAC GCAGGACGAC ACGCTCCAGA CCATCCTGTT CAATGCCGCC CAGGCGTATT ACAACCTGCG CGACACGCAG GCGGCGCTCG ACGCGGCGCG CACGACCGAA CGCGTCGCGC AGGATAGCCT CACCGCGGCG AAGGCGAAGC ACGACGCCGG CGCCGGCACG CTGAGCGATC AACTGCAGGC GCAAACGAGC TATCGCCGCG CGGTGCTCGA TCGCGTGAGC GCCGAAGGCG ACGTGCGGAA CGCGACGGGC GTGCTCGCCG TCGCGATGGG GCTCGACGCG AACACGCCGC TGCGGATCGC GACCGCCGAG CCGCCGGTCG ATCGCAACGC GTTCGCCGAA GGCATCGCGC AATTGATCGA CGAGGCGAAG CGGCAGCATC CGAAGCTCGT CGCCGCGCGC GCGAAACTCG ACGCGGCGCG CGCGAACGTC GATGCGGTGC GTGCGCAGGG CCGCCCGACC ATCTCGCTGA CCGGCAGCCT CAGCCGCAAC AGCCCGTCGT ATCAGCAGCA GCCGGGCATC CAGACCACCG CGAGCCACGG CAGCATGATC GGCGTGCAGG TGACGATCCC GCTCTTCGAA GGCTTCGCGT CCGGCTACCG CGTCGCGGCC GCGCAGGCAC AGGCGGATGC GCAGGAGGCC GACGTGCAGA ACACCGAGCT GAACGTCTCG CTCGACGTGT GGAAGAGCTA TCAGAGCCTG CAGACCGACA CCGCGAATCT CGACAATTCG AAGGACCTGC TCGGCGATGC GCAACGCTCG CTCGACATCG CACGGGGCCG GTACAAGGCG GGCGTCGGCA CGTTCACGGA GTTGCTCAAT GCGCAGACCG CGCTCGCGGA CGCGCAGAAG CAGCGCGTGC AGGCGCTGTC GAAATGGCGC ACCGCGCGGC TCAAGCTCGC GGCGAGCCTC GGCAGCATCG GCCTGTGGTC CGCCCATTGA
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Protein sequence | MKPARTLAMA GALALFASQA THAQWLDLYG TRKNVSASPA APMLKNATCQ PELADRPIEL EDAILQAICA NPQARRAWAD ARAQAAQLGV KEAAYLPTLN ATAGIQRNWQ TTTYEQDLGP ITLTADQKQI QTSRYGALNL SWVLFDFGKR SAALRQAREL LAAANATQDD TLQTILFNAA QAYYNLRDTQ AALDAARTTE RVAQDSLTAA KAKHDAGAGT LSDQLQAQTS YRRAVLDRVS AEGDVRNATG VLAVAMGLDA NTPLRIATAE PPVDRNAFAE GIAQLIDEAK RQHPKLVAAR AKLDAARANV DAVRAQGRPT ISLTGSLSRN SPSYQQQPGI QTTASHGSMI GVQVTIPLFE GFASGYRVAA AQAQADAQEA DVQNTELNVS LDVWKSYQSL QTDTANLDNS KDLLGDAQRS LDIARGRYKA GVGTFTELLN AQTALADAQK QRVQALSKWR TARLKLAASL GSIGLWSAH
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