Gene BURPS1710b_2986 details

Gene Information

• Locus tag: BURPS1710b_2986
• Symbol: rfaD
• ID: 3690862
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007434
• Strand: -
• Start bp: 3291671
• End bp: 3292663
• Gene Length: 993 bp
• Protein Length: 330 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637729442
• Product: ADP-L-glycero-D-manno-heptose-6-epimerase
• Protein accession: YP_334365
• Protein GI: 76812091
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0451] Nucleoside-diphosphate-sugar epimerases
• TIGRFAM ID: [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCTCA TCGTTACCGG CGCGGCCGGC TTCATCGGCG CGAACATCGT CAAGGCGCTG 
AACGAGCGCG GCGAGACGCG CATCATCGCG GTCGACAACC TGACGCGCGC GGACAAGTTC 
AAGAATCTCG TCGATTGCGA GATCGACGAC TATCTCGACA AGACCGAGTT CGTCGAGCGC 
TTCGCGCGCG GCGATTTCGG CAAGGTGCGC GCGGTGTTTC ATGAAGGCGC CTGCTCGGAC 
ACGATGGAAA CCGACGGCCG CTACATGATG GACAACAACT TCCGCTACAG CCGCGCGGTG 
CTCGACGCGT GCCTCGCGCA GGGCACGCAG TTCCTGTATG CGTCGTCGGC CGCGATCTAC 
GGCGGCTCGA GCCGCTTCGT CGAGGCGCGC GAGTTCGAGG CGCCGCTCAA TGTGTACGGC 
TATTCGAAGT TCCTGTTCGA TCAGGTGATC CGCCGCGTGA TGCCGAGCGC GAAGAGCCAG 
ATCGCGGGCT TCCGCTATTT CAACGTGTAC GGGCCGCGCG AGTCGCACAA GGGGCGCATG 
GCGTCGGTTG CGTTCCACAA CTTCAACCAG TTTCGCGCCG AGGGCAAGGT CAAGCTCTTC 
GGCGAGTACA ACGGCTATGG TCCGGGCGAG CAGACGCGCG ATTTCGTGTC GGTCGAGGAC 
GTCGCGAAGG TGAACCTGCA TTTCTTCGAT CACCCGCAGA AGTCGGGCAT CTTCAATCTC 
GGTACCGGCC GCGCGCAGCC GTTCAACGAC ATCGCGACGA CGGTCGTCAA CACGCTGCGC 
GCGCTCGAAG GCCAGCCCGC GCTCACGCTT GCTGAGCAGG TCGAGCAGGG GCTCGTCGAA 
TACGTGCCGT TCCCGGACGC GCTGCGCGGC AAGTACCAGT GCTTCACGCA AGCCGATCAG 
ACGAAGCTGC GCGCGGCCGG CTACGACGCG CCGTTCCTGA CGGTGCAGGA AGGCGTCGAT 
CGCTACGTTC GTTGGCTGTT CGGCCAGCTG TAA 

 

Protein sequence

MTLIVTGAAG FIGANIVKAL NERGETRIIA VDNLTRADKF KNLVDCEIDD YLDKTEFVER 
FARGDFGKVR AVFHEGACSD TMETDGRYMM DNNFRYSRAV LDACLAQGTQ FLYASSAAIY 
GGSSRFVEAR EFEAPLNVYG YSKFLFDQVI RRVMPSAKSQ IAGFRYFNVY GPRESHKGRM 
ASVAFHNFNQ FRAEGKVKLF GEYNGYGPGE QTRDFVSVED VAKVNLHFFD HPQKSGIFNL 
GTGRAQPFND IATTVVNTLR ALEGQPALTL AEQVEQGLVE YVPFPDALRG KYQCFTQADQ 
TKLRAAGYDA PFLTVQEGVD RYVRWLFGQL