Gene BURPS1710b_2918 details

Gene Information

• Locus tag: BURPS1710b_2918
• Symbol: rne
• ID: 3689576
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007434
• Strand: +
• Start bp: 3225887
• End bp: 3229144
• Gene Length: 3258 bp
• Protein Length: 1085 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 637729374
• Product: ribonuclease E
• Protein accession: YP_334299
• Protein GI: 76811508
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000100731
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGTTCA ATGCGACGCA GCAGGAAGAA CTGCGCGTCG CCATCGTCGA TGGGCAGAAG 
CTCATCGATA TCGATATCGA AACCGCCGGC CGCGAACAGC GCAAAGGCAA CATCTACAAG 
GGCGTCGTCA CCCGCATCGA ACCGTCGCTC GAAGCCTGCT TCGTCAATTA CGGCGAAGAC 
CGCCACGGCT TCCTGCCGTT CAAGGAAGTC GCCCGCCAGT ACTTCAAGGA AGGCGTCGAC 
ATGCGCTCCG CGCGCATCCA GGACGCGCTG CGCGAGGGCC AGGAGCTGAT CGTCCAGGTC 
GAGAAGGAAG AGCGCGGCAA CAAGGGCGCG GCGCTTACCA CCTTCATCTC GCTCGCCGGC 
CGCTACCTCG TGCTGATGCC GAACAACCCG CGCGGCGGCG GCGTGTCGCG CCGCATCGAG 
GGCGACGAGC GCCAGGAACT GCGCGAGACG ATGGCGCAAC TGCAGATCCC CGACGGCATG 
AGCATGATCG CCCGCACCGC GGGCATCGGC CGCAGCGCCG AGGAACTGCA GTGGGACCTG 
AACTACCTGC TGCAGCTCTG GCGCGCGATC GAGGCAGCGT CGCAAAGCGG CCACCCCGGC 
CAGCCGATGC TGATCTACCT CGAATCGAGC CTCGTGATCC GAGCGATCCG GGACTATTTC 
CAGCCGGACA TCGGCGAAAT CCTGATCGAC ACGACCGAGA TCCACGATCA GGCGCGCGCG 
TTCATGGACA TCGTGATGCC CGACAACGTC GGCAAGGTGA AGCGCTATCA CGACGACGTG 
CCCCTCTTCT CGCGCTTCCA GATCGAGCAC CAGATCGAAA CCGCGTACTC GCGCACGGTG 
CCGCTGCCGT CGGGCGGCGC GATCGTGATC GACCACACCG AGGCGCTCGT CGCGATCGAC 
GTGAACTCGG CGCGCGCGAC CAAGGGCGCG GACATCGAGG AAACGGCGAC CCGCACGAAC 
CTCGAGGCGG CCGACGAAGT CGCCCGCCAG TTACGTCTGC GCGACCTGGG CGGCCTGATC 
GTGATCGACT TCATCGACAT GGAATCGGCC AAGAGCCAGC GCGAAGTCGA GCAGCGCCTG 
AAGGACGCGC TCAAGCACGA CCGCGCGCGC GTGCAGATGG GCAAGATCTC GCGCTTCGGC 
CTGATGGAGC TGTCGCGCCA GCGCCTGCGC CCGGCCCTGT CCGAAGGCAG CCACGTCACC 
TGCCCGCGCT GCAACGGCAC AGGCCACATC CGCGACACCG AATCGTCCGC GCTGCAAGTG 
CTGCGGATCA TTCAGGAAGA AGCGATGAAG GAGAACACCG CGGCGATCCA CTGTCAGGTG 
CCCGTCGAGG TGACGGCCTT CCTGCTCAAC GAAAAGCGCC AGGAAATCAA CAAGATCGAA 
TCGCGCTTCA AGGTCGGCGT CGTGCTGATT CCGAACAAGC ACCTCGATAC GCCGCACTAC 
AAGCTCGAGC GCCTGCGTCA CGACGATGCG CGCCTCGACG ATCCGCGCGC ATCATGGAAG 
ATGGCCGAGG AAGCCGCCCG CGAGCTCGAG GCGGAAACCG GCTACAGCAA GCGCGCCGAG 
GAAACGAAGC CGCGCCAGGA AGCGGCCGTC AAGGGCATCA CGCCCGAGCG GCCGGCGCCG 
AGCCCCGCGC CGCAGCGCCA GAGCGCGCCG GAAGCGGCGG CGCCCGTGGC CGCCGCGCCC 
GCGAGCGGCG GCGGTTTCAT GAAATGGCTG AAGGGCCTGT TCGGCGCGCA GCCGGCTGCG 
GTGCCCGCAC CGGCGCCCGC CGCGCAGGAA ACGGCTGCGC GTCCGGCGCG CGAGCGCGCG 
GAGCGTGGTG AGCGCGGCGA GAAGGCCGAG CGCGGCGAAC GCGGCGGCGA TCGCAACCGC 
CACCGCCGCG GCGGCGCCGC GCAGCAGGCG GGTGGACGCG ACCAGGCGGC GGCAGGCGGC 
GGCCGCGCTC AGGCGCCGCG CGCCGAGCGC GAAGGCAAGG AAACCCGCGA GCCGCGCGAA 
GGCCGCGAAG CACGCGGCGG CCGGGACAAC CGGGAAGGCC GCGAGGCGCG CGAAACCCGC 
GAGGCGCGCG AGCCCCGTGA ACAACGCGAG CCGCGCGAGG CACGCGAGCA GCGCGAAGCG 
CGCGAGCGCG CCGAAACGGT CGACGCCGCG GAAGCCCCGC GCGGCGAGCG CCGTGAACGC 
GGCGAGCGCC GTAAGCCGGC CCCGCATGTC GCGACGCTCG AAACGGTGAA TCGCGGCGAA 
AGCGCACATG CGGAAACCGC CGAAAAGCCG CTGTACGCGC CTGGCGCGGA AGCCGGCGTC 
GACGCGGATT CGAACGCACG CGACGGCGAA GAACGCCGCC GCCGCCGCCG TGGCCGCCGT 
GGCGGCCGCC GCGAGCGTGA AGACGAAGTC GCGGGCGCCG TGCAGGCGGC GGAAGGCAGC 
GAAGGCGTGA CGGCCGAGGC CGAAGCGCTC GAGCACGCCG AGCACGCGCA ACAACGCGTC 
GCGCCGGTAG CGAACCAAGC GCCCGAGCAT GCCGCGCAAG CGGGTGCGGG CGTCGCGGCG 
GCAGCCGCCG CGACCGTCGC AGCCGAGGCG ATTGCGCATG TCGAGAGCGG CGCGAAGGTC 
GAGCCGCAAC CGGCGGCCGA GGCATCCGCT GGCGATACGG AACAGGCCGA GGCGGTGCCC 
GCGCGGTCCA TCGAAGCACC GGCGCAAGCG GCTTCGACGG GTCAAGCGGA AGCCGTGCAA 
GCCGCACCGG CCGCACCGGC ACACGTGACG CCGGCCACGG CCGACGTCGC GCGCGAGCCG 
GCCGCGCCTG CCGAAACTGC GTCTGCCGAA ACTACGCCTG CTGAAATCCC GCCTGCCGAA 
GCCGCGCCCG CCGAAGCACC GGCCGCGGAA GCGTCCGAAG TGGCCGCGAG CGCGGTCGCT 
TCGGCCCCGG CCCCGGCCGC GGAGCCCGCG CCGGCCGCCG AGCCGCACCG GCCGGCGCCC 
GTCTCGGCCG CCCCCGCCTC GGCCGCGCCG GCCGAAGCGG ACGCCGCGCG CGAGCCGGCC 
GCCGTCGCCG AGCCGCACGT GCCGGCGGCC GCCGCGACCC CTACCCCGGC TTCGGTGGCG 
ACCACGCCGG GCGCGAGCCT CGATACGGCG CTCGCGGCCG CCGGCCTTGT CTGGGTCAAT 
ACCGACACGG ACAAGCTGCG CGCCGCACAG GCCGCCGCCG CGCAAATCGT GCAGCCCGTG 
CGCGTGCCGC GCGAACGCAA GCCGCTGCCG CCCGTCGACG CGACGCCGAT GCAGCAGGTC 
GAGACGACGC ACCGCTGA 

 

Protein sequence

MLFNATQQEE LRVAIVDGQK LIDIDIETAG REQRKGNIYK GVVTRIEPSL EACFVNYGED 
RHGFLPFKEV ARQYFKEGVD MRSARIQDAL REGQELIVQV EKEERGNKGA ALTTFISLAG 
RYLVLMPNNP RGGGVSRRIE GDERQELRET MAQLQIPDGM SMIARTAGIG RSAEELQWDL 
NYLLQLWRAI EAASQSGHPG QPMLIYLESS LVIRAIRDYF QPDIGEILID TTEIHDQARA 
FMDIVMPDNV GKVKRYHDDV PLFSRFQIEH QIETAYSRTV PLPSGGAIVI DHTEALVAID 
VNSARATKGA DIEETATRTN LEAADEVARQ LRLRDLGGLI VIDFIDMESA KSQREVEQRL 
KDALKHDRAR VQMGKISRFG LMELSRQRLR PALSEGSHVT CPRCNGTGHI RDTESSALQV 
LRIIQEEAMK ENTAAIHCQV PVEVTAFLLN EKRQEINKIE SRFKVGVVLI PNKHLDTPHY 
KLERLRHDDA RLDDPRASWK MAEEAARELE AETGYSKRAE ETKPRQEAAV KGITPERPAP 
SPAPQRQSAP EAAAPVAAAP ASGGGFMKWL KGLFGAQPAA VPAPAPAAQE TAARPARERA 
ERGERGEKAE RGERGGDRNR HRRGGAAQQA GGRDQAAAGG GRAQAPRAER EGKETREPRE 
GREARGGRDN REGREARETR EAREPREQRE PREAREQREA RERAETVDAA EAPRGERRER 
GERRKPAPHV ATLETVNRGE SAHAETAEKP LYAPGAEAGV DADSNARDGE ERRRRRRGRR 
GGRREREDEV AGAVQAAEGS EGVTAEAEAL EHAEHAQQRV APVANQAPEH AAQAGAGVAA 
AAAATVAAEA IAHVESGAKV EPQPAAEASA GDTEQAEAVP ARSIEAPAQA ASTGQAEAVQ 
AAPAAPAHVT PATADVAREP AAPAETASAE TTPAEIPPAE AAPAEAPAAE ASEVAASAVA 
SAPAPAAEPA PAAEPHRPAP VSAAPASAAP AEADAAREPA AVAEPHVPAA AATPTPASVA 
TTPGASLDTA LAAAGLVWVN TDTDKLRAAQ AAAAQIVQPV RVPRERKPLP PVDATPMQQV 
ETTHR