| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_2231 |
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| Symbol | fimD |
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| ID | 3689007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007434 |
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| Strand | - |
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| Start bp | 2495004 |
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| End bp | 2497505 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637728687 |
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| Product | outer membrane usher protein |
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| Protein accession | YP_333626 |
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| Protein GI | 76811081 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.269054 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGCCG CCGCGCTCAC GGCGCTTTCG GCGACCGCTC GCGGCCAACA GGCGCTGGAG
TTCGATCCCG CCTTTCTCGA GCTGGGCGGC GGCCAGGGCG GAGCCGATCT TTCCGTGTAC
GCGACATCGA ACCGCGTGCT GCCCGGCGTC TATCCGGTAT CGGTCTTCGT CAACGGCGAG
GCGATCGAGC GGCGCGACAT CACGTTCGTG TCCGAAAGCG CGCGCGACGG GCGGGAAGAC
GCGATCCCCT GCCTGAGCGC CCGGATGTTC GACGAATGGG GCGTCGACAT CGCCGCGTTT
GCGAAGCTCG CGCAAGCCGG CGAAGACGCA TGCGTCGACA TCGCCGACAG CGTGCCCCAC
GCGCGAACCG AGTTCGACAG TCATCAACTG CGGTTGAACG TAACGGTGCC CCAGGCCGCG
TTGAAGCGGC GCGCGCGCGG CGCGGTGGAC CCGGCGCGCT GGGATCAGGG TATCGACGCC
GCGCTGCTCG ACTATCAACT GAGCGCTGCC CAGTACGCCG GCGGCAATTT CGCGTCCGCC
CGTTCGCGCA CGACGTTGTA TGCGGGGTTG CGCGGCGCCG TCAATCTGGG CGCATGGCGG
CTGTCGCACA CGTCGTCGTT TCTGCACGGG CTCGACGGCC GGAATCGCTT TCAGATCGTC
AATACGTTCG TCCAGCGTGA CATCGCCGGC TGGAACAGCC GCCTCACCGC CGGGGAGGGC
ACCACGCCCG CGAACATTTT CGACGGATTT CAGTTTCTCG GCGTGCAACT CAATACCGAC
GAGACCATGC TGCCCGACAG TCTGCAGGGC TACGCGCCCA CCGTGCACGG CGTCGCGCAG
ACCAATGCGC AGGTGACGAT CAGGCAGAAT GGTTTCGTCA TCTACAGCAC CTACGTGCCG
CCGGGGCCGT TTACGATCGA CGATCTTTAT CCGACGTCGT CGTCGGGCAA TCTGGAAGTG
ACGATTACCG AGGCCGACGG GCACGTCACG ACATTCACGC AACCGTACTC CGCGGTGCCG
ATGTTGCTGC GCGACGGTTC GTGGCGGTAT AACGTCACGG CGGGCCAATA CCGTGACGGC
ATTTCAGGCT CGCATCCGAG CTTTGCGATG GCGACGCTCG CGCGCGGGCT GGCGGGCGAA
TTCTCGTTGT ACGGCGGGTT CATCGGGGCC GGCATGTATC AATCGGTGCT CGTCGGAATC
GGCAAGAACC TGGGCAGCAT CGGCGCGGTA TCGCTCGACG TGACGCACGC GCGCAGCGCG
GTCGACTTGG CCGACAGCAG CACGGTGTCG GGGCATGCCT TTCGCGTGCT TTACGCGAAG
GCCGTGGGCA GTTGGGGCAC CGATTTCCGG TTGCTCGCAT ACCGCTACTC CACCGCCGGC
TATCGAAGCT TCGCCGATGC GGTGCAACTG CGCGACGGCA GCGAGCCCGC GGCGCTGGGC
GCAAAGCGCC AGCGCCTCGA GGGCACGGTG AACCAGCGTC TCGGCCGCCT CGGCTCGATG
TACGCGACCG TGGCCGTGCA GACCTACTGG GGCAGCGCGG CGCGCAGCAC CGTGTATCAG
CTCGGGCACA GCGGGAATTG GGGGCGCGCC AGCTACGGAC TCTATGCGGC CTATAGCAAA
GGAAGCGGCG TGCCGTCGAG CTGGAACGTC TCGTTGTCGC TATCGATGCC GCTGGAAGTG
TTTTTCGGCG GCGCGCGCGT GCGTGCGCCG GCGGGCGGCA GCGCGAATGT CTCGTACTTC
GCCAGCCGGA ACAACGAGAA CCACGTCAAT CAGCAGATGA CGGCCAGCGG CAGCAGCAGC
GAGCAGCGCC TGAACTACAG CGTGGGCGTC GCGCATTCCA GCGAGTCGGA CGTGAGCGGC
TCGGTGTCGG CCAGCTACCT CGCGCCGTTC GGCCGCTACG ACGCGTCGAT CGGCAGCGGC
CGCGGGTACA CGCAGGCCGC ATTCACTGCC GCCGGCGGCA TGCTGTGGCA TGGCACCGGA
GTGTTGTTCA CGCAACCGCT CGGCGAGACC GTGGCGGTCG TGGACGTGCC GAACGTGCAG
GGCGTGCGTT TCGAAATGCA CCCGGGCGTG AGCACGGATC GGGCGGGCGA AGCGGTGATT
CCGCGGCTGA ACCCCTATCG GGTCAACCGC ATCGTCGTCG ACCAGCGCCG GATGCCGCAG
GACGTGGAGA TCCGCAACCC GGTGAGCGAA GTCGTGCCCA CCCGGGCGGC GGTCGTTCAA
ACGCACTTCG ATTCCGTCGT CGGGCTTCGC GCGCTGTTCA CGTTGATGCG CGCGGACGGC
TCGTTTCCGC CGCAGGGCGC GACGGCCGAG AACGACGAGG GACAGGTGCT CGGCGTCGTC
GGGATGGACG GCGAGACGTT CGTGGCGGGC TTGCCCGCCG CCGAAGGGCA TTTCGTCGTT
CGCTGGGGGG CGGCGCGACA GAATCGCTGC CGCGTGAATT ACGCGCTGCC CGGAAAGGCG
GCGATCGGCG CGTACTTGGC CGTGGAGGCG ATATGCGATT GA
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| Protein sequence | MLAAALTALS ATARGQQALE FDPAFLELGG GQGGADLSVY ATSNRVLPGV YPVSVFVNGE
AIERRDITFV SESARDGRED AIPCLSARMF DEWGVDIAAF AKLAQAGEDA CVDIADSVPH
ARTEFDSHQL RLNVTVPQAA LKRRARGAVD PARWDQGIDA ALLDYQLSAA QYAGGNFASA
RSRTTLYAGL RGAVNLGAWR LSHTSSFLHG LDGRNRFQIV NTFVQRDIAG WNSRLTAGEG
TTPANIFDGF QFLGVQLNTD ETMLPDSLQG YAPTVHGVAQ TNAQVTIRQN GFVIYSTYVP
PGPFTIDDLY PTSSSGNLEV TITEADGHVT TFTQPYSAVP MLLRDGSWRY NVTAGQYRDG
ISGSHPSFAM ATLARGLAGE FSLYGGFIGA GMYQSVLVGI GKNLGSIGAV SLDVTHARSA
VDLADSSTVS GHAFRVLYAK AVGSWGTDFR LLAYRYSTAG YRSFADAVQL RDGSEPAALG
AKRQRLEGTV NQRLGRLGSM YATVAVQTYW GSAARSTVYQ LGHSGNWGRA SYGLYAAYSK
GSGVPSSWNV SLSLSMPLEV FFGGARVRAP AGGSANVSYF ASRNNENHVN QQMTASGSSS
EQRLNYSVGV AHSSESDVSG SVSASYLAPF GRYDASIGSG RGYTQAAFTA AGGMLWHGTG
VLFTQPLGET VAVVDVPNVQ GVRFEMHPGV STDRAGEAVI PRLNPYRVNR IVVDQRRMPQ
DVEIRNPVSE VVPTRAAVVQ THFDSVVGLR ALFTLMRADG SFPPQGATAE NDEGQVLGVV
GMDGETFVAG LPAAEGHFVV RWGAARQNRC RVNYALPGKA AIGAYLAVEA ICD
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