| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_2058 |
|---|
| Symbol | amrB |
|---|
| ID | 3690250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007434 |
|---|
| Strand | + |
|---|
| Start bp | 2223740 |
|---|
| End bp | 2226871 |
|---|
| Gene Length | 3132 bp |
|---|
| Protein Length | 1043 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637728514 |
|---|
| Product | multidrug efflux protein |
|---|
| Protein accession | YP_333453 |
|---|
| Protein GI | 76811441 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.572121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTT TCTTCATCGA TCGCCCGGTG TTCGCATGGG TGATCTCCTT GTTCATCATG
CTGGGCGGCA TCTTCGCGAT CCGCGCGCTG CCCGTCGCGC AGTATCCGGA CATCGCGCCG
CCCGTCGTCA GCCTCTATGC GACGTATCCG GGCGCGTCCG CGCAGGTCGT CGAGGAATCG
GTCACCGCCG TGATCGAGCG CGAGATGAAC GGCGTGCCCG GCCTGCTGTA CACGTCGGCG
ACGAGCAGCG CCGGCCAGGC GTCGCTGTCG CTCACGTTCA AGCAGGGCGT GAGCGCCGAT
CTCGCGGCCG TCGACGTGCA GAACCGCCTG AAAATCGTCG AGGCGCGGCT GCCCGAGCCC
GTGCGGCGCG ACGGCATCTC GATCGAGAAG GCGGCCGACA ACGCGCAGAT CATCGTGTCG
CTCACGTCGG AGGACGGACG GTTATCGGGC GTGGAGCTCG GCGAATACGC GTCGGCGAAC
GTGTTGCAGG CGCTGCGGCG CGTCGAGGGC GTCGGCAAGG TGCAGTTCTG GGGCGCCGAG
TATGCGATGC GGATCTGGCC GGACCCCGTG AAGATGGCGG CGCTCGGCCT GACGGCGTCC
GATATCGCGT CGGCCGTGCG CGCGCACAAC GCGCGCGTGA CGATCGGCGA CGTCGGCCGC
AGCGCGGTGC CCGACAGCGC GCCGATCGCG GCGACCGTGC TCGCCGACGC GCCGCTCACG
ACGCCCGACG CGTTCGGCGC GATCGCGCTG CGCGCGCGCG CCGACGGCTC GACGCTGTAC
CTGCGCGACG TCGCGAGAAT CGAGTTCGGC GGCAACGATT ACAACTACCC GTCGTTCGTG
AACGGCAAGA CGGCGACGGG CATGGGCATC AAGCTCGCGC CCGGTTCGAA TGCGGTCGCC
ACCGAAAAGC GCGTGCGCGC GACGATGGAG GAGCTCGCGA AGTTCTTTCC GCCGGGCGTC
AAGTACCAGA TTCCGTACGA GACGGCGTCG TTCGTGCGCG TGTCGATGAG CAAGGTCGTC
ACGACGCTCG TCGAGGCGGG CGTGCTCGTG TTCGCTGTGA TGTTCCTCTT CATGCAGAAC
TTCCGCGCGA CGCTGATTCC GACGCTCGTC GTGCCCGTCG CGCTGCTCGG CACGTTCGGC
GCGATGCTCG CCGCGGGCTT CTCGATCAAC GTGCTGACGA TGTTCGGGAT GGTGCTCGCG
ATCGGCATCC TCGTCGACGA CGCGATCGTC GTCGTCGAGA ACGTCGAGCG GCTGATGGTC
GAGGAGAAGC TGCCGCCGTA CGAGGCCACC GTGAAGGCGA TGAAGCAGAT CAGCGGCGCG
ATCGTCGGGA TCACCGTCGT GCTCACGTCG GTGTTCGTGC CGATGGCGTT CTTCGGCGGC
GCGGTCGGCA ACATCTACCG GCAGTTCGCG TTCGCGCTGG CGGTGTCGAT CGGCTTCTCG
GCGTTTCTCG CGCTGTCGCT CACGCCGGCG CTCTGCGCGA CGCTGCTCAA GCCCGTCGCC
GACGACCATC ACGAGAAGGA CGGCTTCTTC GGCTGGTTCA ACCGTTTCGT CGCGCGCTCG
ACGCACCGCT ACACGCGGCG CGTCGGGCGG GTGCTCGAGC GCCCGCTGCG CTGGCTCGTC
GTCTACGGCG CGCTGACGGC CGCCGCCGCG CTGCTGATCA CGAAGCTGCC GGCCGCGTTC
CTGCCCGACG AGGATCAGGG CAACTTCATG GTGATGGTGA TTCGCCCGCA GGGCACGCCG
CTCGCCGAGA CGATGCAGAG CGTGCGGCGC GTCGAGGAAT ACGTGCGCAC GCATTCGCCG
AGCGCGTACA CGTTCGCGCT CGGCGGCTAC AACCTGTACG GCGAAGGGCC GAACGGCGGG
ATGATCTTCG TCACGATGAA GGACTGGAAG GAGCGCAAGC GGGCGCGGGA CCAGGTGCAG
GCGATCATCG CGGAGATCAA CGCGCATTTC GCCGGCACGC CGAACACGAT GGTGTTCGCG
ATCAACATGC CGGCGCTGCC GGACCTCGGC CTGACGGGCG GCTTCGACTT CCGGCTGCAG
GACCGCGGCG GGCTCGGCTA CGGCGCGTTC GTCGCCGCGC GCGAGAAGCT GCTCGCCGAG
GGGCGCAAGG ACCCCGTCCT GACCGATTTG ATGTTCGCCG GCACGCAGGA CGCGCCGCAG
CTGAAGCTCG ACATCGATCG CGCGAAGGCG TCGGCGCTCG GCGTATCGAT GGAGGAAATC
AACGCGACGC TCGCTGTGAT GTTCGGCTCG GACTACATCG GCGATTTCAT GCACGGCTCG
CAGGTGCGCC GCGTGATCGT GCAGGCGGAC GGGCGGCACC GGCTCGACGC CGCCGACGTG
ACGAAGCTGC GCGTGCGCAA CGCGAAGGGC GAGATGGTGC CGCTCGCGGC GTTCGCGACG
CTGCACTGGA CGATGGGCCC GCCGCAGTTG ACGCGCTACA ACGGCTTTCC GTCGTTTACG
ATCAACGGCG CGGCGTCGGC CGGGCACAGC AGCGGCGAGG CGATGGCGGC GATCGAGCGG
ATCGCGTCGA CGCTGCCCGC CGGCACCGGC TACGCGTGGT CCGGCCAGTC GTACGAGGAG
CGGCTGTCGG GCGCGCAGGC GCCGATGCTG TTCGCGCTGT CGGTGCTCGT CGTGTTCCTC
GCGCTCGCGG CGCTGTACGA GAGCTGGTCG ATTCCGTTCG CGGTGATGCT CGTCGTGCCG
CTCGGCGTGA TCGGCGCGGT CGCGGGCGTC ACGCTGCGCG GGATGCCGAA CGACATCTAT
TTCAAGGTGG GGCTGATCGC GACGATCGGT TTGTCCGCGA AGAACGCGAT CCTGATCGTC
GAGGTCGCGA AGGATCTGGT CGCGCAGCGC ATGTCGCTCG CCGACGCGGC GCTCGAGGCC
GCGCGGCTGC GGCTGCGGCC GATCGTGATG ACCTCGCTCG CGTTCGGCGT CGGCGTGCTG
CCGCTCGCGT TCGCGACGGG CGCCGCATCC GGCGCGCAGA TCGCGATCGG CACGGGGGTG
CTCGGCGGCG TGATCAGCGC GACGCTGTTC GCGATCTTCC TCGTCCCGCT CTTTTTCGTC
TGCGTCGGGC GCGTGTTCGA CGTCGTTCCG CGCCGCCGAG GCGGCGCGCA AGCGGCACTG
GAGGCCAAGT GA
|
|---|
| Protein sequence | MARFFIDRPV FAWVISLFIM LGGIFAIRAL PVAQYPDIAP PVVSLYATYP GASAQVVEES
VTAVIEREMN GVPGLLYTSA TSSAGQASLS LTFKQGVSAD LAAVDVQNRL KIVEARLPEP
VRRDGISIEK AADNAQIIVS LTSEDGRLSG VELGEYASAN VLQALRRVEG VGKVQFWGAE
YAMRIWPDPV KMAALGLTAS DIASAVRAHN ARVTIGDVGR SAVPDSAPIA ATVLADAPLT
TPDAFGAIAL RARADGSTLY LRDVARIEFG GNDYNYPSFV NGKTATGMGI KLAPGSNAVA
TEKRVRATME ELAKFFPPGV KYQIPYETAS FVRVSMSKVV TTLVEAGVLV FAVMFLFMQN
FRATLIPTLV VPVALLGTFG AMLAAGFSIN VLTMFGMVLA IGILVDDAIV VVENVERLMV
EEKLPPYEAT VKAMKQISGA IVGITVVLTS VFVPMAFFGG AVGNIYRQFA FALAVSIGFS
AFLALSLTPA LCATLLKPVA DDHHEKDGFF GWFNRFVARS THRYTRRVGR VLERPLRWLV
VYGALTAAAA LLITKLPAAF LPDEDQGNFM VMVIRPQGTP LAETMQSVRR VEEYVRTHSP
SAYTFALGGY NLYGEGPNGG MIFVTMKDWK ERKRARDQVQ AIIAEINAHF AGTPNTMVFA
INMPALPDLG LTGGFDFRLQ DRGGLGYGAF VAAREKLLAE GRKDPVLTDL MFAGTQDAPQ
LKLDIDRAKA SALGVSMEEI NATLAVMFGS DYIGDFMHGS QVRRVIVQAD GRHRLDAADV
TKLRVRNAKG EMVPLAAFAT LHWTMGPPQL TRYNGFPSFT INGAASAGHS SGEAMAAIER
IASTLPAGTG YAWSGQSYEE RLSGAQAPML FALSVLVVFL ALAALYESWS IPFAVMLVVP
LGVIGAVAGV TLRGMPNDIY FKVGLIATIG LSAKNAILIV EVAKDLVAQR MSLADAALEA
ARLRLRPIVM TSLAFGVGVL PLAFATGAAS GAQIAIGTGV LGGVISATLF AIFLVPLFFV
CVGRVFDVVP RRRGGAQAAL EAK
|
|---|
| |