| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_1802 |
|---|
| Symbol | |
|---|
| ID | 3689130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007434 |
|---|
| Strand | - |
|---|
| Start bp | 1963234 |
|---|
| End bp | 1964421 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637728258 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_333203 |
|---|
| Protein GI | 76809114 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGACC CGAACGATGC CGCCGAGCGC GGCAACGACG AACGCAGCGA GCACGACGAA
CCCGGCCGCG AACGCGCGCG CGGGCGCCGC GAAGAGGCCG ACGCCCACGC GCGCGACGCG
CGGCCCGGCG ACGCGCCTTC CGGCGAGCGC AAGCGGCCCG GCAAGAAACC GCTCGTCGTG
CTCGCGATCA TCGTCGTGCT GCTGCTCGTC GGCGCGTTCG TCTGGTGGTT CGCGACGCGC
AATCAGGTCA GCACCGACGA CGCCTACACC GACGGCAACG CGATCACGAT CGCGCCGAAG
GTGTCCGGCT ACGTCGTCGC GCTCGCGATC GACGACAACG TCTACGTCCA TCGCGGCGAT
CTGCTGCTCG TGATCGACAA GCGCGACTAT CAGGCGCAAG TCGACGCGGC GCGCGCGCAG
CTCGGGCTCG CGCAGGCGCA GCTCGACGCC GCGCAGGTGC AGCTCGACAT CGCGCACGTG
CAGTTCCCCG CGCAATACCG GCAGGCGCAG GCGCAGATCG AGGCCGCGCA GGCGAGCTTC
AGGCAGGCGC TCGCCGCGTA CGAGCGGCAG CACGCGGTCG ACGCGCGCGC GACATCGCAG
CAGGCGATCG ACGTCGCCGA CGCGCAACGG CTCACCGCCG ACGCGAACGT CGCGACCGCC
CGCGCGCAGG CGCGCACCGC GAGCCTCGTG CCGCAGCAGA TCCGGCAGGC TCAGACCGCG
GTCGAGCAGC GCCGCCAGCA GGTGCTGCAG GCGCAAGCGC AGCTCGAGGC CGCCCAGCTC
GCGCTGTCGT ACTGCGAAGT GCGCGCGCCG TCCGACGGCT GGATCACGCG CCGCAACGTG
CAGCTCGGCT CGTTCCTGCA GGCGGGCGCG GCGCTCTTCG CGATCGTCAC GCCGCAGCTG
TGGGTGACGG CGAATTTCAA GGAATCGCAG CTCGAGCGCA TGCGCGCCGG CGATCGCGTG
AGCGTGTCGG TCGACGCGTA TCCGAACCTC GAGCTGCACG GCCACGTCGA CAGCATCCAG
CTCGGCAGCG GCTCGCGCTT CTCCGCGTTT CCGCCGGAGA ACGCGACCGG CAATTTCGTG
AAGATCGTTC AGCGCGTGCC GGTGAAGATC GCGATCGACG GCGGCCTGCC GCGCGATCCG
CCGCTCGGAA TCGGGCTGTC GGTCGTGCCG AAGGTGTATC TGAAATGA
|
|---|
| Protein sequence | MPDPNDAAER GNDERSEHDE PGRERARGRR EEADAHARDA RPGDAPSGER KRPGKKPLVV
LAIIVVLLLV GAFVWWFATR NQVSTDDAYT DGNAITIAPK VSGYVVALAI DDNVYVHRGD
LLLVIDKRDY QAQVDAARAQ LGLAQAQLDA AQVQLDIAHV QFPAQYRQAQ AQIEAAQASF
RQALAAYERQ HAVDARATSQ QAIDVADAQR LTADANVATA RAQARTASLV PQQIRQAQTA
VEQRRQQVLQ AQAQLEAAQL ALSYCEVRAP SDGWITRRNV QLGSFLQAGA ALFAIVTPQL
WVTANFKESQ LERMRAGDRV SVSVDAYPNL ELHGHVDSIQ LGSGSRFSAF PPENATGNFV
KIVQRVPVKI AIDGGLPRDP PLGIGLSVVP KVYLK
|
|---|
| |