| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_1501 |
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| Symbol | sdeC |
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| ID | 3689282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007434 |
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| Strand | - |
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| Start bp | 1581747 |
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| End bp | 1583084 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637727957 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_332905 |
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| Protein GI | 76809521 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.310778 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAATC AAGAAAAGCC CACGCACCGC TCTCCCGCTC CCGCGCCCTC CGGTCCCCGC
CCGCGCCGCC CGCGCCGCAG GCTGATCGCA TTCGGCGTGC TCGCGGCCGT CGCGATCGGC
GCCCTGCTGT GGTGGCATCC GTGGAAGAGC GGCGGCACCC CGAGCGCCCA GGGCCAGCCG
GGCGGCGCGC GCAAGCGAGG CGGCCCCGCC GCGCTCGCGA ACCTGCCGCA GCCGGTGCAG
GTCGCCACGG CGGCGCGCGG CGAGATGCCC GTCGTCCTCA ACGCGCTCGG CACCGTCACG
CCGCTCGCGA ACGTGACCGT CCGGACCCAG TTGTCCGGCT ATCTGCAGGC GGTGTCGTTC
CAGGAAGGCC AGATCGTGAA GAAGGGCGAC GTGCTCGCGC AAATCGATCC GCGCCCGTAC
CAGATCTCGC TCGCGAACGC GCAAGGCGCG CTCGCGCGCG ACGAGGCGCT CCTCGCGACC
GCGCGCCTCG ACCTGAAGCG CTATCAGACG CTCGTCGCGC AAGACTCGAT CGCGAAGCAG
ACGGCCGACA CGCAGGCCTC GCTCGTCAAG CAGTACGAAG GCACCGTGCA GATCGACCGC
GCGGCGATCG ACTCCGCGAA GCTCAATCTC GCGTACGCGC GCATCACCGC GCCCGTGTCG
GGCCGCGTCG GCCTGCGGCA GGTGGACCCG GGCAATTACG TGACGCCGTC GGACACGAAC
GGCATCGTCG TCATCACGCA ACTGCAGCCG ATGAGCGTGA TCTTCACCAC GTCGGAGGAC
AATCTGCCCG CGATCCTCAA GCAGGTGGGC GCGGGCGGCA AGCTGTCGGT CACCGCGTAC
AACCGCAACA ACACGACGCC GCTCGAGACG GGCGTGCTCG ACACGCTCGA CAACCAGATC
GACACGGCCA CCGGCACCGT GAAGCTGCGC GCGCGCTTCG AGAACCGGAA CAACCTGCTG
TTCCCGAATC AGTTCGTCAA CACGCGGCTG CTCGTCGACA CGATCCGCGA TGCGACGATC
GTGCCGACGT CGGCCGTGCT CACGGGCTCG ATCGGCCAGT TCGTCTACGT CGTGAAGCCG
GACAACACGG TGAGCGTGCG CAAGGTGAAG CCCGGCCCCA TCGACGGCGA GCGCACGAGC
ATCGTCGAGG GGCTCGCCGT CGGCGAGCGC GTCGTGACGG ACGGCTCCGA CCGGTTGCGC
GAAGGCTCGG CGGTGACGAT CCCGGCCGAC AAGCCGAAGC AGGCTTCGGG CGCAAGAAGC
GCTTCGAGCG CTTTGGGCGC TTCGGACGCG CACGGCGGGC ACCGTCGCCG CGGCGCGTCG
CAAGCCCGAT CGCAATGA
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| Protein sequence | MDNQEKPTHR SPAPAPSGPR PRRPRRRLIA FGVLAAVAIG ALLWWHPWKS GGTPSAQGQP
GGARKRGGPA ALANLPQPVQ VATAARGEMP VVLNALGTVT PLANVTVRTQ LSGYLQAVSF
QEGQIVKKGD VLAQIDPRPY QISLANAQGA LARDEALLAT ARLDLKRYQT LVAQDSIAKQ
TADTQASLVK QYEGTVQIDR AAIDSAKLNL AYARITAPVS GRVGLRQVDP GNYVTPSDTN
GIVVITQLQP MSVIFTTSED NLPAILKQVG AGGKLSVTAY NRNNTTPLET GVLDTLDNQI
DTATGTVKLR ARFENRNNLL FPNQFVNTRL LVDTIRDATI VPTSAVLTGS IGQFVYVVKP
DNTVSVRKVK PGPIDGERTS IVEGLAVGER VVTDGSDRLR EGSAVTIPAD KPKQASGARS
ASSALGASDA HGGHRRRGAS QARSQ
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