Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_1499 |
Symbol | |
ID | 3688280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007434 |
Strand | - |
Start bp | 1575320 |
End bp | 1578622 |
Gene Length | 3303 bp |
Protein Length | 1100 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637727955 |
Product | multidrug resistance protein mdtC |
Protein accession | YP_332903 |
Protein GI | 76809275 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCTGG CCCGCCCGTT CATCACCCGC CCCGTCGCGA CGACGCTGCT CGCGCTCGGC ATCGCGCTCG CCGGCCTGTT CGCGTTCGTC AAGCTGCCCG TCTCGCCGCT GCCGCAGGTC GATTTTCCGA CGATCCTCGT GCAGGCGTCG CTGCCCGGCG CGAGCCCGGA GACCGTCGCG ACCAGCGTGA CGAGCCCGCT CGAGCGGCAT CTGGGCTCGA TCGCGGACGT CGCCGAGATG ACGTCGATGA GCTCGGTCGG CAACGCGCGG ATCGTGCTGC AGTTCAACCT GAACCGCGAC ATCGACGGCG CCGCGCGCGA CGTGCAGGCC GCGATCAACG CCGCGCGCGC GGATCTGCCC GCGAGCCTGA AGAGCAACCC GACGTACCGC AAGGTCAACC CGGCCGATTC GCCGATCATG GTCGTGTCGC TCACGTCGAA GACGGCTTCG CCCGCGAAGC TGTACGACGC TGCGTCGACG GTGCTGCAGC AGTCGCTATC GCAGATCGAC GGCATCGGCC AGGTCAGCCT GAGCGGCTCG GCGAACCCGG CCGTGCGCGT CGAGCTCGAA CCGCAGGCGC TGTTCCATTA CGGCATCGGC CTCGAGGACG TGCGCGCGGC GCTCGCGTCG GCGAACGCGA ACAGCCCGAA GGGCGCGATC GAAGCCGGCC CGCACCGCTA CCAGTTGTAC ACGAACGATC AGGCGACGAA GGCCGCGCAA TACAAGGATC TCGTGATCGC GTACCGCAAC CACGCGGCGG TGAGCCTGTC CGACGTGTCG AGCGTCGTCG ATTCGGTCGA GGACCTGCGC AACCTCGGCC TCATGAACGG CGAGCGCGCG GTGCTCGTGA TCCTGTACCG CTCGCCCGGC GCGAACATCA TCGACACGAT CGAGCGCGTG AAGGCCGCGC TGCCGCAACT GACGGCCGCG CTGCCCGCCG ACATCCAGGT CACGCCGGTG CTCGACCGCT CGCGCACGAT CCGCGCGTCG CTCGCCGACA CCGAGCACAC GCTCATCATC GCGGTGAGCC TCGTCGTGAT GGTCGTGTTC CTGTTCCTGC GCAACTGGCG CGCGACGCTG ATTCCGAGCG TCGCGGTGCC GATCTCGATC GTCGGCACGT TCGGCGCGAT GTATCTGCTC GGCTTCTCGC TGAACAACCT GTCGCTGATG GCGCTCATCG TCGCGACGGG CTTCGTCGTC GACGACGCGA TCGTCGTGCT CGAGAACATC GCGCGCCACA TCGAGAACGG CACGCCGCGG CTGCAGGCCG CGTTCGACGG CGCGCGCGAG GTCGGCTTCA CGGTGCTGTC GATCAGCCTG TCGCTCGTCG CGGTGTTTCT GCCGATCCTG CTGATGGGCG GCATCGTCGG GCGCCTGTTC CGCGAATTCG CGCTCACGCT GTCGCTCGCG ATCGCCGTGT CGCTCGTCGT GTCGCTCACG CTCACGCCGA TGATGTGCGC GCGCCTGCTG CCCGAAGCCC ACGCGCCGCG CGACGAGGGC CGCGTCGCGC GCTGGCTCGA GCGCGGCTTC GAATGGATGC AGCGCGGCTA CGAGCGCACG CTGTCGTGGG CGCTGCGCCA TCCGTTCACG ATCCTGATGA CGCTCGTCGC GACGATCGCG CTGAACATCG CGCTGTACAT CGTCGTGCCG AAGGGCTTCT TCCCGCAGCA GGACACGGGC CTCATGATCG GCGGCATCCA GGCCGACCAG ACGACGTCGT TCCAGGCGAT GAAGCTCAGG TTCACCGAGA TGATGCGCAT CATCCGCGCG AATCCGAACG TCGCGAACGT CGCGGGCTTC ACGGGCGGCG CGCAGACGAA CTCGGGCTTC ATGTTCGTCG CGCTGAAGGA CAAGCCGCAG CGCAAGCTCT CGGCCGATCA GGTGATCCAG CAACTGCGGC CGCAGCTCGC CGAGGTCGCG GGCGCGCGCA CGTTCCTGCA AGCCGCGCAG GACATCCGCG CGGGCGGCCG GCAGAGCAAC GCGCAGTATC AGTTCACGCT GCTCGGCGAT TCGACGGCCG AGCTGTACAA GTGGGGGCCG ATCCTCACGG AGGCGCTGCA AAAGCGCCCC GAGCTCGCCG ACGTGAATTC CGACCAGCAG CAAGGCGGCC TCGAGGCGAT GGTGACGATC GACCGCGCGA CGGCCGCGCG CCTCGGCATC AAGCCCGCGC AGATCGACAA CACGCTGTAC GACGCGTTCG GCCAGCGCCA GGTCTCGACG ATCTACAACC CGCTCAACCA GTACCACGTC GTGATGGAGG TCGCGCCGCA GTACTGGCAG AGCCCGGAGA TGCTCAAGCA AATCTACATC AGCACGTCGG GCGGCAGCGC GAGCGGCGTG CAGACGACGA ACGCGGCGGC GGGCACCTAC GTGGCGACCA CGGCGCGCGC GTCGACGGCC GGCGCGGCCG CGCAGAGCGC CGCGGCGATC GCCGCCGATT CGGCGCGCAA CCAGGCGCTC AACTCGATCG CGTCGAGCGG CAAGTCGAGC GCGTCGTCGG GCGCGGCGGT GTCGACGTCG AAATCGACGA TGGTGCCGCT CTCCGCGATC GCGAGCTTCG GGCCGAGCAC GACGCCGCTC GCGGTCAACC ACCAGGGCCT GTTCGTCGCG ACGACGATCT CGTTCAACCT GCCGCCCGGC GTGTCGCTGT CGAAGGCGAC GCAGGTGATC TACCAGACGA TGGCCGAAGT CGGCGTGCCG CCGACGATCC AGGGCAGCTT CCAGGGCACC GCGCAGGCAT TCCAGGAATC GCTGAAGGAT CAGCCGATCC TGATCCTCGC CGCGCTCGCG GCCGTCTACA TCGTGCTCGG GATCCTGTAC GAGAGCTACA TCCATCCGGT GACGATCCTG TCGACGCTGC CGTCGGCGGG CGTCGGCGCG CTGCTCGGCC TGCTGCTCTT CAAGACCGAG TTCAGCATCA TCGCGCTGAT CGGCGTGATC CTGCTCATCG GCATCGTGAA GAAGAACGCG ATCATGATGG TCGACTTCGC GATCGACGCG TCGCGGCAGG GCAAGTCTTC GTTCGACGCG ATCCACGAAG CATGCCTGCT GCGCTTCCGG CCGATCATGA TGACGACGAT GGCGGCGCTC CTCGGCGCGC TGCCGCTCGC GTTCGGCCGC GGCGACGGCG CCGAGATGCG CGCGCCGCTC GGGATCGCGA TCGCGGGCGG GCTCATCGTG TCGCAGATGC TCACGCTCTA TACGACGCCC GTCGTCTATC TGTACATGGA CCGGCTGCGC GTGTGGGCCG AGAAGCGCCG CGACCGCCGC TCATCGGGCG GCGCGGCGAT CGCGGGCGAG TGA
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Protein sequence | MNLARPFITR PVATTLLALG IALAGLFAFV KLPVSPLPQV DFPTILVQAS LPGASPETVA TSVTSPLERH LGSIADVAEM TSMSSVGNAR IVLQFNLNRD IDGAARDVQA AINAARADLP ASLKSNPTYR KVNPADSPIM VVSLTSKTAS PAKLYDAAST VLQQSLSQID GIGQVSLSGS ANPAVRVELE PQALFHYGIG LEDVRAALAS ANANSPKGAI EAGPHRYQLY TNDQATKAAQ YKDLVIAYRN HAAVSLSDVS SVVDSVEDLR NLGLMNGERA VLVILYRSPG ANIIDTIERV KAALPQLTAA LPADIQVTPV LDRSRTIRAS LADTEHTLII AVSLVVMVVF LFLRNWRATL IPSVAVPISI VGTFGAMYLL GFSLNNLSLM ALIVATGFVV DDAIVVLENI ARHIENGTPR LQAAFDGARE VGFTVLSISL SLVAVFLPIL LMGGIVGRLF REFALTLSLA IAVSLVVSLT LTPMMCARLL PEAHAPRDEG RVARWLERGF EWMQRGYERT LSWALRHPFT ILMTLVATIA LNIALYIVVP KGFFPQQDTG LMIGGIQADQ TTSFQAMKLR FTEMMRIIRA NPNVANVAGF TGGAQTNSGF MFVALKDKPQ RKLSADQVIQ QLRPQLAEVA GARTFLQAAQ DIRAGGRQSN AQYQFTLLGD STAELYKWGP ILTEALQKRP ELADVNSDQQ QGGLEAMVTI DRATAARLGI KPAQIDNTLY DAFGQRQVST IYNPLNQYHV VMEVAPQYWQ SPEMLKQIYI STSGGSASGV QTTNAAAGTY VATTARASTA GAAAQSAAAI AADSARNQAL NSIASSGKSS ASSGAAVSTS KSTMVPLSAI ASFGPSTTPL AVNHQGLFVA TTISFNLPPG VSLSKATQVI YQTMAEVGVP PTIQGSFQGT AQAFQESLKD QPILILAALA AVYIVLGILY ESYIHPVTIL STLPSAGVGA LLGLLLFKTE FSIIALIGVI LLIGIVKKNA IMMVDFAIDA SRQGKSSFDA IHEACLLRFR PIMMTTMAAL LGALPLAFGR GDGAEMRAPL GIAIAGGLIV SQMLTLYTTP VVYLYMDRLR VWAEKRRDRR SSGGAAIAGE
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