| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_1246 |
|---|
| Symbol | hisM |
|---|
| ID | 3689253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007434 |
|---|
| Strand | - |
|---|
| Start bp | 1297111 |
|---|
| End bp | 1298589 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637727702 |
|---|
| Product | histidine transport system permease protein |
|---|
| Protein accession | YP_332657 |
|---|
| Protein GI | 76811247 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.217158 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACGCA CGGGGCGTCT CGCGCGACAC GCGGGACGCG TCTTTCGCGG CGCGCACGAC
GCGCCGTCAA GGACTTCATA TGTTTCTTCA AGGCTACGGC CCGCTGATAC TCTCCGGCAC
CTGGCAGACC GTCAAGCTCG CGGTGCTGTC GCTCGCGCTG TCGTTCCTGC TCGGCCTCGT
CGGCGCGGCG GCGAAACTGT CGCGAAACCG CGTCTCGAAC GGAATCGGCA CGCTCTACAC
GACGCTCATT CGCGGCGTGC CGGACCTCGT GCTGATGCTG CTCCTCTTCT ACAGCCTGCA
GATCTGGCTG AACCAGCTCA CCGATCTGAT GAACTGGGAT CAGATCGACA TCGATCCGTT
CGCGGCCGGC GTGCTCGTGC TCGGCTTCAT CTACGGCGCG TACTTCACCG AAACCTTCCG
CGGCGCGTTC CTGTCGGTGC CGCGCGGCCA GCTCGAGGCG GGCAGCGCGT ACGGGATGAC
GAACTGGCAG GTGTTCGCGC GCGTCATGTT CCCGCAGATG ATGCGCTTCG CGCTGCCCGG
CATCGGCAAC AACTGGCAGG TGCTCGTGAA ATCGACGGCG CTCGTGTCGA TCATCGGCCT
CGCCGACGTG GTGAAGGCGT CGCAGGACGC GGGCAAGGGC ACGCTGCGGT TCTTCTTCTT
CACGCTGCTC GCCGGCGCGA TCTATCTCGC GATCACGACG ATCTCGAACT TCGTGCTGAT
GTGGCTCGAG AAGCGTTATT CGACCGGCGT ACGCAAGGCA GACCTATGAT CGAGCTGATC
CAAGAATACT GGCGCAACTA CCTGTATACG GACGGGTATC GCTTCACCGG CCTCGCGATC
ACGATGTGGC TGCTCGTCGT GTCGATCGGC ATCGGCTTCT GTCTGTCCGT GCCGCTCGCG
GTCGCGCGCG TGTCGAAGAA GAAGTGGCTC GCGGGCGCGG TCTGGCTCTA CACGTACGTG
TTCCGCGGCA CGCCGCTCTA CGTGCAGCTC CTGCTCTGCT ACACGGGCCT TTACAGCCTG
CAGGCCGTGC GCGGCACGCC GATGCTCGAC GCGTTCTTTC GCGACGGGAT GAACTGCACG
CTGCTCGCGT TCACGCTGAA CACCTGCGCG TATACGACCG AAATCTTCGC GGGCGCGATC
AAGGCGACGT CGTACGGCGA GATCGAGGCG GCCCGCGCTT ACGGGATGTC GACCTTCACG
CTGTATCGCC GGATCGTGCT GCCTTCGGCG CTGCGCCGCG CGCTGCCGCT CTACAGCAAC
GAGGTGATCC TGATGCTGCA TGCGACGACG GTCGCGTTCA CGGCGACCGT GCCCGATATC
CTGAAGATCG CGCGCGACGT CAATTCGGCG ACCTACATGT CGTTCCACGC GTTCGGCATC
GCCGCCCTTC TCTACCTCGC GATCTCGTTT ACGCTCGTGT GGCTGTTCCG CCGCGCCGAA
CGCCGCTGGC TCGCGTATCT GCGCCCGCAA GGCAAATGA
|
|---|
| Protein sequence | MIRTGRLARH AGRVFRGAHD APSRTSYVSS RLRPADTLRH LADRQARGAV ARAVVPARPR
RRGGETVAKP RLERNRHALH DAHSRRAGPR ADAAPLLQPA DLAEPAHRSD ELGSDRHRSV
RGRRARARLH LRRVLHRNLP RRVPVGAARP ARGGQRVRDD ELAGVRARHV PADDALRAAR
HRQQLAGARE IDGARVDHRP RRRGEGVAGR GQGHAAVLLL HAARRRDLSR DHDDLELRAD
VAREALFDRR TQGRPMIELI QEYWRNYLYT DGYRFTGLAI TMWLLVVSIG IGFCLSVPLA
VARVSKKKWL AGAVWLYTYV FRGTPLYVQL LLCYTGLYSL QAVRGTPMLD AFFRDGMNCT
LLAFTLNTCA YTTEIFAGAI KATSYGEIEA ARAYGMSTFT LYRRIVLPSA LRRALPLYSN
EVILMLHATT VAFTATVPDI LKIARDVNSA TYMSFHAFGI AALLYLAISF TLVWLFRRAE
RRWLAYLRPQ GK
|
|---|
| |