Gene BURPS1710b_0765 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS1710b_0765 
SymbolrpoN 
ID3689426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 1710b 
KingdomBacteria 
Replicon accessionNC_007434 
Strand
Start bp776377 
End bp777918 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content64% 
IMG OID637727221 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_332178 
Protein GI76811536 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.823391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCAAACT TCCGGTATGA CTCCCTTTTT GCCATGAAAG CCAGTCTTCA ACTTCGCCTG 
TCGCAGCATC TCGCGCTCAC GCCCCAGCTT CAGCAGTCGA TCCGGCTGCT GCAACTGTCG
ACGCTCGAAC TGCAACAGGA AGTCGCGACG GCGATCGCGC AGAACCCGCT GCTCGAGAAC
GACGATGACT GGATCGCGAG CCCGTTGCGC GTCGCGGCCG ACGGCTCGGT GATCGCGCAG
ACGCCCGCGT CGTCCGCGCC CGAGCCGATG GCGGGCGCGC CGAACGGCAC GGCTGCGACC
AATGAGCGCA CCGAGCGCGA CGAAACCGCC GGCGTCGACG AATACGACAG CTATTCGGCC
GACGGCGGCG ACGCGAGCCA GTGGAACCTC GACGACTTCG GCCGCTCGCC CGCCGCGTCC
GACGACGACG ATCTGCCGCC GATGCAGATC CACGAGACGT CGACGTCGCT GCGCGATCAT
CTGATGGCGC AGTTGCGCGT CACGCAGGCG AGCCCGCGCG ATCGCGCGCT CGTCACGTTC
CTGATCGAAT CGCTCGACGA CGACGGCTAC CTGAGCGCGT CGCTCGAGGA AGTGCTCGCC
GATCTGCCGG CGGAGCTCGA GGTCGACGTC GACGAACTGA ACGCGGGGCT CGCGCTCGTG
CACAGCTTCG ATCCGGCGGG CGTCGGCGCG CGCTCCGCGT CCGAATGCCT GAAGCTGCAG
TTGCTGCGCC TGGATCCGTC CCCGACGCGC GCGCTCGCGC TCGATATCGT GTCGCAGCAT
CTGGAGCTGC TCGCCGCGCG CGATTTCACG CGCCTGCGCA AGCAACTGAA GGCGACCGAC
GACGCGCTGC GCGACGCGCA CGCGCTGATC CGCTCGCTCG AGCCGTTCCC CGGCGCGGCG
TACGGCAAGG CCGAAGCCGA TTACGTGGTG CCCGACATCA TCGTGAAGAA GGCCGGCCAG
AACTGGCAGG CGGAACTCAA TCCGGAAGTG GTGCCGAAGC TGCGGATCAA CAATCTTTAC
GCGAACATCC TGCGCAACAG CCGGGGCGAT CCGAGCGCGG GATCGCTGAA GCAACAGCTT
CAGGAAGCGC GCTGGCTGAT CAAGAACATT CAGCAGCGGT TCGAGACGAT CCTGCGCGTC
GCGCAGGCGA TTGTCGAGCG TCAGAAGAAT TTCTTCGCGC ACGGCGAAAT TGCGATGCGC
CCCTTGGTTT TGCGGGAAAT AGCTGATACG CTGGGCCTAC ACGAGTCGAC TGTCTCCCGT
GTGACAACCG GCAAGTACAT GCTGACCCCG TTCGGCACAC TTGAATTTAA GTACTTCTTC
GGATCGCACG TATCGACAGA CACCGGAGGT GCCGCGTCGT CGACAGCGAT CCGCGCCCTC
ATCAAACAAC TGATAGGAGC CGAAGACCCC AAATCCCCTC TTTCGGACAG TCGCATAGCC
GAGCTGCTAG CGGAACAAGG GTTCGTGGTC GCGCGCCGCA CGGTTGCCAA ATATCGCGAA
GCCCTCAAGA TCCCGGCGGT GAATCTGCGC AAGTCTCTGT AG
 
Protein sequence
MANFRYDSLF AMKASLQLRL SQHLALTPQL QQSIRLLQLS TLELQQEVAT AIAQNPLLEN 
DDDWIASPLR VAADGSVIAQ TPASSAPEPM AGAPNGTAAT NERTERDETA GVDEYDSYSA
DGGDASQWNL DDFGRSPAAS DDDDLPPMQI HETSTSLRDH LMAQLRVTQA SPRDRALVTF
LIESLDDDGY LSASLEEVLA DLPAELEVDV DELNAGLALV HSFDPAGVGA RSASECLKLQ
LLRLDPSPTR ALALDIVSQH LELLAARDFT RLRKQLKATD DALRDAHALI RSLEPFPGAA
YGKAEADYVV PDIIVKKAGQ NWQAELNPEV VPKLRINNLY ANILRNSRGD PSAGSLKQQL
QEARWLIKNI QQRFETILRV AQAIVERQKN FFAHGEIAMR PLVLREIADT LGLHESTVSR
VTTGKYMLTP FGTLEFKYFF GSHVSTDTGG AASSTAIRAL IKQLIGAEDP KSPLSDSRIA
ELLAEQGFVV ARRTVAKYRE ALKIPAVNLR KSL