Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_0765 |
Symbol | rpoN |
ID | 3689426 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007434 |
Strand | - |
Start bp | 776377 |
End bp | 777918 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637727221 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_332178 |
Protein GI | 76811536 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.823391 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCAAACT TCCGGTATGA CTCCCTTTTT GCCATGAAAG CCAGTCTTCA ACTTCGCCTG TCGCAGCATC TCGCGCTCAC GCCCCAGCTT CAGCAGTCGA TCCGGCTGCT GCAACTGTCG ACGCTCGAAC TGCAACAGGA AGTCGCGACG GCGATCGCGC AGAACCCGCT GCTCGAGAAC GACGATGACT GGATCGCGAG CCCGTTGCGC GTCGCGGCCG ACGGCTCGGT GATCGCGCAG ACGCCCGCGT CGTCCGCGCC CGAGCCGATG GCGGGCGCGC CGAACGGCAC GGCTGCGACC AATGAGCGCA CCGAGCGCGA CGAAACCGCC GGCGTCGACG AATACGACAG CTATTCGGCC GACGGCGGCG ACGCGAGCCA GTGGAACCTC GACGACTTCG GCCGCTCGCC CGCCGCGTCC GACGACGACG ATCTGCCGCC GATGCAGATC CACGAGACGT CGACGTCGCT GCGCGATCAT CTGATGGCGC AGTTGCGCGT CACGCAGGCG AGCCCGCGCG ATCGCGCGCT CGTCACGTTC CTGATCGAAT CGCTCGACGA CGACGGCTAC CTGAGCGCGT CGCTCGAGGA AGTGCTCGCC GATCTGCCGG CGGAGCTCGA GGTCGACGTC GACGAACTGA ACGCGGGGCT CGCGCTCGTG CACAGCTTCG ATCCGGCGGG CGTCGGCGCG CGCTCCGCGT CCGAATGCCT GAAGCTGCAG TTGCTGCGCC TGGATCCGTC CCCGACGCGC GCGCTCGCGC TCGATATCGT GTCGCAGCAT CTGGAGCTGC TCGCCGCGCG CGATTTCACG CGCCTGCGCA AGCAACTGAA GGCGACCGAC GACGCGCTGC GCGACGCGCA CGCGCTGATC CGCTCGCTCG AGCCGTTCCC CGGCGCGGCG TACGGCAAGG CCGAAGCCGA TTACGTGGTG CCCGACATCA TCGTGAAGAA GGCCGGCCAG AACTGGCAGG CGGAACTCAA TCCGGAAGTG GTGCCGAAGC TGCGGATCAA CAATCTTTAC GCGAACATCC TGCGCAACAG CCGGGGCGAT CCGAGCGCGG GATCGCTGAA GCAACAGCTT CAGGAAGCGC GCTGGCTGAT CAAGAACATT CAGCAGCGGT TCGAGACGAT CCTGCGCGTC GCGCAGGCGA TTGTCGAGCG TCAGAAGAAT TTCTTCGCGC ACGGCGAAAT TGCGATGCGC CCCTTGGTTT TGCGGGAAAT AGCTGATACG CTGGGCCTAC ACGAGTCGAC TGTCTCCCGT GTGACAACCG GCAAGTACAT GCTGACCCCG TTCGGCACAC TTGAATTTAA GTACTTCTTC GGATCGCACG TATCGACAGA CACCGGAGGT GCCGCGTCGT CGACAGCGAT CCGCGCCCTC ATCAAACAAC TGATAGGAGC CGAAGACCCC AAATCCCCTC TTTCGGACAG TCGCATAGCC GAGCTGCTAG CGGAACAAGG GTTCGTGGTC GCGCGCCGCA CGGTTGCCAA ATATCGCGAA GCCCTCAAGA TCCCGGCGGT GAATCTGCGC AAGTCTCTGT AG
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Protein sequence | MANFRYDSLF AMKASLQLRL SQHLALTPQL QQSIRLLQLS TLELQQEVAT AIAQNPLLEN DDDWIASPLR VAADGSVIAQ TPASSAPEPM AGAPNGTAAT NERTERDETA GVDEYDSYSA DGGDASQWNL DDFGRSPAAS DDDDLPPMQI HETSTSLRDH LMAQLRVTQA SPRDRALVTF LIESLDDDGY LSASLEEVLA DLPAELEVDV DELNAGLALV HSFDPAGVGA RSASECLKLQ LLRLDPSPTR ALALDIVSQH LELLAARDFT RLRKQLKATD DALRDAHALI RSLEPFPGAA YGKAEADYVV PDIIVKKAGQ NWQAELNPEV VPKLRINNLY ANILRNSRGD PSAGSLKQQL QEARWLIKNI QQRFETILRV AQAIVERQKN FFAHGEIAMR PLVLREIADT LGLHESTVSR VTTGKYMLTP FGTLEFKYFF GSHVSTDTGG AASSTAIRAL IKQLIGAEDP KSPLSDSRIA ELLAEQGFVV ARRTVAKYRE ALKIPAVNLR KSL
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