| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_0611 |
|---|
| Symbol | cpdB |
|---|
| ID | 3688239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007434 |
|---|
| Strand | - |
|---|
| Start bp | 624958 |
|---|
| End bp | 627006 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637727067 |
|---|
| Product | 2`,3`-cyclic-nucleotide 2`-phosphodiesterase |
|---|
| Protein accession | YP_332025 |
|---|
| Protein GI | 76810013 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGTTTTC GCCGGCGGCG CCTTGCCGCC GCCCTCGTCG CGTGCGCGGC GCTCGTCGCG
GGCTGCAACG ACGACGTCGA TTCGCCCGGC GCGCAGTCCG GCGCGAGCGC GCCCGCCGGC
ACGAAGGCGA CGCTCGCCGT GCTCGAGACG ACCGATCTGC ACACGAACGT GCTGTCGTAC
GACTACTTCA AGCTCGCGGC CGACAAGTCG CTCGGCTTCG AGCGGGTCGC GACGCTGATC
GCGCAGGCGC GCGCGCAATA TCCGAACACG CTGCTGCTCG ATAACGGCGA CACGATCCAG
GGCACGGCGC TCGCCGACTA TCAGGCGCTC GTGAAGCCCG TGTCGTGCGG CGAGACGCTT
GCGATCTACA AGGTGATGAA CGCGGCGAAG TTCGACGGCG GCGGCATCGG CAATCACGAA
TTCAACTACG GGCTGCCGTA CCTGTCGCAG GTGACGGGCA ACGCGTTCGC CGTCGACGGC
CTGCCCGATC CGGCCCGGCA GAAGAAATGC GCGGGGCCGG ACTTCCCGCA GGTGCTCGCG
AACGTGATCA GCGCGAAGAC GAACGCGCCC CTCTTCACGC CGTACACGAT CCTCACGAAG
AACGTCACCG CGACGACGCC CGACGGCCGC ACGGTCACGG CGCCCGTGAA GGTCGGCATC
ATCGGCTTCA CGCCGCCCGC GATCATGAGC TGGGACAAGC GCTGGCTCGA CGGCAAGGTC
TATACGACGG GCCTGAAGGA AGCCGCCGAG AAGTACATCC CCGAGATGCG CGCGAAGGGC
GCGGACCTCG TCGTCGCGAT CTCGCACGGC GGGCTCGACA ACTCGCCGTA CTCGCCGACG
ATGGAAAACG GCAGCTGGTG GCTGTCCACC GTGCCCGGCA TCGACGCGAT GCTGATCGGC
CACTCGCACC AGGTGTTCCC CGACGCGACG AGCACCGTCG CGCAGTTCAA CCTGCCGGGC
GTCGACAAGG TCAAGGGCAC GGTCAACGGC GTGCCGACCG TGATGGCGAA CTACTGGGGC
AAGCACCTCG GCGTGATCAA GCTCGGCCTC GCGTTCGACG GCAAGACGTG GCGCGTCGAC
AAATCGCAGA CCACCGTCGA GGCGCGCTCG ATCCAGAACC CGGACAAGAG CTACGTCGAC
GCCGATCCGT CGGTGGCCGC GGCGATCGCG GCCGAGCACC AGGCGACGAT CGACTACGTG
AAGACGCCGA TCGGCAGCAC CGACTACCGG ATGACCAGCT ACTTCGCGGA CGTGGGCGAT
CCGGGCGCGA TCCAGCTCGT CAACGAGGCG CAGGCCGACT ACGTCGCGAA CTATGTGCAG
ACGAACCTGC CGCAGTATGC GTCGCTGCCG GTGCTGTCGG TGAGCGCGCC GTTCAAGAGC
GGCTTCGGCG GCGGCACCGA TTTCACCGAC GTCGCGGCGG GCGCGCTCGC GATCAACAAC
GCGGCCGATC TCTACCTGTA TCCGAACACG GTCTACGCGG TGAAGGTGAG CGGCGCGGAC
ATCAAGAACT GGCTCGAGAC CGCGGCGAAG CGCTTCAACA CGATCGACCC GACGAAAGCG
ACCGTGCAGA AGCTCGTGAG CACGTTCCCC GGCTACAACT TCGACATGTT CACATCCGCC
GATCTGCGCT ACGAGATCGA CGTCACGCAG CCGGCGGGCA GCCGGATCCG CAACCTCGCG
TACAAGGGCG CGCCGATCGA TCCGAATGCG CAGTTCATCG TCGCGACGAA CAACTACCGC
GCGAGCGGCG GCGGCAACTT CCCCGGCCTG GACGGCAGCA AGACGATCTT CGCGTCGCCC
GACGCGAACC GCGACGTGCT GATCGCATAC ATCAAGAAGC GCGGCCGGAT CACGCGCGCG
GCGGACGGCA TGCAGCGCAG CTGGCGCTTC ACGAAGCTCG CGGGCTCGGT CGCGCACGTG
CAGTTCGCGT CGGCGCCGAA CCTCGCGGCG CTCGCGAGCA CCGCGGGCCT CGCGGGCATC
ACGCAAGTCG CGGCCGACGA CGGCTCCGGC AAGGGACTCG CGACTTACGA GATCGATCTG
ACGCAATGA
|
|---|
| Protein sequence | MRFRRRRLAA ALVACAALVA GCNDDVDSPG AQSGASAPAG TKATLAVLET TDLHTNVLSY
DYFKLAADKS LGFERVATLI AQARAQYPNT LLLDNGDTIQ GTALADYQAL VKPVSCGETL
AIYKVMNAAK FDGGGIGNHE FNYGLPYLSQ VTGNAFAVDG LPDPARQKKC AGPDFPQVLA
NVISAKTNAP LFTPYTILTK NVTATTPDGR TVTAPVKVGI IGFTPPAIMS WDKRWLDGKV
YTTGLKEAAE KYIPEMRAKG ADLVVAISHG GLDNSPYSPT MENGSWWLST VPGIDAMLIG
HSHQVFPDAT STVAQFNLPG VDKVKGTVNG VPTVMANYWG KHLGVIKLGL AFDGKTWRVD
KSQTTVEARS IQNPDKSYVD ADPSVAAAIA AEHQATIDYV KTPIGSTDYR MTSYFADVGD
PGAIQLVNEA QADYVANYVQ TNLPQYASLP VLSVSAPFKS GFGGGTDFTD VAAGALAINN
AADLYLYPNT VYAVKVSGAD IKNWLETAAK RFNTIDPTKA TVQKLVSTFP GYNFDMFTSA
DLRYEIDVTQ PAGSRIRNLA YKGAPIDPNA QFIVATNNYR ASGGGNFPGL DGSKTIFASP
DANRDVLIAY IKKRGRITRA ADGMQRSWRF TKLAGSVAHV QFASAPNLAA LASTAGLAGI
TQVAADDGSG KGLATYEIDL TQ
|
|---|
| |