Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_0534 |
Symbol | |
ID | 3691796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007434 |
Strand | + |
Start bp | 539393 |
End bp | 540556 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637726990 |
Product | putative outer membrane porin protein precursor |
Protein accession | YP_331948 |
Protein GI | 76810813 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0511105 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGACGC CCCCGAACGG CATCGCGTCT TCCGGACGTC GGCCGCCCGT TCGCCTCGCA TCCGTTAGAC GACAATCTGG AGATCACATG AAGTCATCCT TCAGCCGCGC GCTGCAAACC ACTTTCGCGT GCGCCGCCGT GGCGGCGCTG GCCGCCGGCG CTTCGGGCGC GCGCGCGCAA TCGAGCGTTC AGCTCTACGG GCAGGTCGAC GAATGGATCG GCGCGCAGAA ATTCCCCGGC GGGCAGCGCG CGTGGGGCGT GCAGGGCGGC GGAATGTCGA CGTCGTACTG GGGGCTGCGC GGCACCGAGG ATCTCGGCGG CGGTTATCAG GCGATCTTCA CGCTCGAGGA TTTCTTCCGC GCGCAGAACG GCCATTACGG CCGCTTCGAC GGCGACACGT TCTTCGGCCG CAATGCGTAT GTCGGACTCG CGACGCCTTA CGGCACGGTG CGCGCCGGGC GCCTGACGAC GCAGCTGTTC ATCTCGACGA TCCTCTTCAA CCCGTTCATC GATTCGTATG TGTTCTCGCC GATGGTCTAC CACGTGTTCC TCGGCCTCGG CACGTTCCCG ACGTATACGA CCGATCAGGG CGTCGTCGGC GATTCGGGCT GGAACAACGC GATCGACTAC ACGAGCCCGA GCTTCGGCGG CTTGAACGCG GCCGCGATGT ACGCGCTCGG CAACACGGCG GGCGACAACC GCTCGAAGAA GTGGAGCGGC CAGCTGAACT ATTCGAGCGG CCCGTTCGCG GCGACGGCCG TCTACCAGTA CGTGAACTTC AACGGCGGCC CGGGCGATCT CGGCGCGCTC GTGTCCGGCA TGAAGAGCCA GGGCGTCGCG CAGCTCGGGC TGTCGTACGA CTTCAAGCTT GCGAAGATCT ACGCGCAATA CATGTATACG AAGAACGAAC TGAACACGGG AAGCTGGCAC GTGAACACCG CGCAAGGCGG CGTATCGGTG CCGCTCGGGC CGGGCAGCGC GCTCGCGTCG TATGCGTATT CGCGCGATTC GGGCGGGCAC GACCAGACGC GTCGCACGTG GGCGCTCGGC TACGATTATC CGCTGTCCAA GCGCACCGAC GTGTATGCCG CGTACATGAA CGACCGCTAT TCGGGCATGT CGGGCGGCGA CACGTTCGGC GCGGGAATTC GTGCGAAGTT CTAA
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Protein sequence | MATPPNGIAS SGRRPPVRLA SVRRQSGDHM KSSFSRALQT TFACAAVAAL AAGASGARAQ SSVQLYGQVD EWIGAQKFPG GQRAWGVQGG GMSTSYWGLR GTEDLGGGYQ AIFTLEDFFR AQNGHYGRFD GDTFFGRNAY VGLATPYGTV RAGRLTTQLF ISTILFNPFI DSYVFSPMVY HVFLGLGTFP TYTTDQGVVG DSGWNNAIDY TSPSFGGLNA AAMYALGNTA GDNRSKKWSG QLNYSSGPFA ATAVYQYVNF NGGPGDLGAL VSGMKSQGVA QLGLSYDFKL AKIYAQYMYT KNELNTGSWH VNTAQGGVSV PLGPGSALAS YAYSRDSGGH DQTRRTWALG YDYPLSKRTD VYAAYMNDRY SGMSGGDTFG AGIRAKF
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