Gene BURPS1710b_0294 details

Gene Information

• Locus tag: BURPS1710b_0294
• Symbol: prtI
• ID: 3688236
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007434
• Strand: -
• Start bp: 300992
• End bp: 301507
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637726750
• Product: ECF sigma factor PrtI
• Protein accession: YP_331710
• Protein GI: 76810010
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000544982
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCTCCG CCGATCTCGA TGACCCATTG CGCGAGTTGC TGCCGCGACT GCGCCGCTTC 
GCGCTCTGGC TGACCCGCGA CGTGCACAGC GCCGACGATC TCGTGCAGTC GACGCTCGAG 
CGCGCGCTGT CGCGCTGGTC GACGCGCCGC GACGCTTCGG CGCTGCGCAG CTGGCTCTTC 
ACGATCCTGT ACCGGCAGTT CGTCGATGCG ACGCGCCGCG CGAAGCGTTA CGCGTGGCTG 
CTCGGCCGGA TCAAGGACGA CGACGAGCCG CAATGGCCGT CCGCCGAGGA TCACGCGCTC 
GCGCGCTCGA TGCTCGACGC GTTCGGCCGG CTGTCGACGG AACAGCGCAG CCTGCTGCTG 
CTCGTCGCCG TCGAAGGGTT CAGCTATCAG GAAGTCGCCG AGCTGCTCGA CATCCCGATC 
GGCACCGTGA TGTCGCGGCT GTCGCGCGCG CGGCAGGCGC TGCGCGCGCT CGGCGACGGC 
GAGATTTCCG CTCCTTCGCT GCGTTTGATG AAATGA 

 

Protein sequence

MPSADLDDPL RELLPRLRRF ALWLTRDVHS ADDLVQSTLE RALSRWSTRR DASALRSWLF 
TILYRQFVDA TRRAKRYAWL LGRIKDDDEP QWPSAEDHAL ARSMLDAFGR LSTEQRSLLL 
LVAVEGFSYQ EVAELLDIPI GTVMSRLSRA RQALRALGDG EISAPSLRLM K