| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_0220 |
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| Symbol | gspD |
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| ID | 3691653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007434 |
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| Strand | + |
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| Start bp | 231196 |
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| End bp | 233448 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637726676 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_331636 |
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| Protein GI | 76811977 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.960002 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGGCGCG TCGCAACGGC GCTCGTCGTC GCCGGAATTG TCGCCGCGCA GGCCGCTCAC
GCTCAGGTCA CGCTCAATTT CGTCAATGCG GACATCGATC AGGTCGCCAA GGCGATCGGC
GCCGCGACGG GCAAGACGAT CATCGTCGAT CCTCGCGTCA AGGGGCAGCT GAACCTCGTC
GCCGAGCGTC CGGTGCCCGA AGATCAGGCG CTGAAGACGC TGCAGTCCGC GCTGCGGATG
CAGGGCTTCG CGCTCGTCCA GGATCACGGC GTCCTGAAGG TCGTGCCGGA AGCCGACGCG
AAGCTGCAGG GCGTGCCGAC CTACATCGGC AACGCGCCGC AGGCGCGCGG CGACCAGGTG
GTCACGCAAG TGTTCGAGCT GCGCAACGAA TCGGCGAACA ACTTGCTTCC GGTGCTGCGC
CCGCTGATCT CGCCGAACAA CACGATCACC GCGTATCCGG CCAACAACAC GATCGTCGTC
ACCGATTACG CGGACAACGT GCGCCGGATC GCGCAGATCA TCGCGGGCGT CGACAGCGCG
GCGGGCTCGC AAGTCGCCGT CGTGCCGCTC AAGAACGCGA ATGCGATCGA CATCGCCGCG
CAACTGACGA AGCTGCTCGA CCCGGGCGCG ATCGGCAACA CCGACGCGAC GCTGAAAGTC
ACCGTGCAGG CCGATCCGCG AACCAATGCG CTGCTGCTGC GCGCATCGAA CGCGCAGCGC
CTCGCCGCGG CGAAGAAGAT CGCGCAGCAG CTCGACGCGC CGAGCGGTGT GCCGGGCAAC
ATGCACGTCG TGCCGCTGCG CAATGCGGAA GCGGTGAAGC TCGCGAAGAC GTTGCGCGGG
ATGCTCGGCA AGGGCGGCGG CGAAAGCGGC TCGTCGGCGA GCTCGAACGA CGCGAACGCG
TTCAATCAGG GCGGCTCGCA AAGCGGCTCG AACTTCTCGA CGGGCGCATC GGGCACGCCG
CCGCTGCCGT CGGGGCTGTC GTCGAATTCA TCGGGCGGCG CGGGCGGCAC GACGGGCGGC
GGCGGGCTCG GCAATGCGGG GCTGCTCGGC GGCGACAAGG ACAAGGGCGA CGACAACCAG
CCGGGCGGAA TGATCCAGGC GGACGCGGCG TCGAATTCGC TCATCATCAC CGCGTCGGAT
CCGGTATACC GGAATCTGCG GGCCGTGATC GACCAGCTCG ATGCGCGGCG CGCGCAGGTA
TACATCGAGG CGCTGGTCGT CGAGCTGCAG GCGACGACCA GCGCCAATCT GGGCATTCAA
TGGCAGGTTG CGAACAACGC GCTCTATGCG GGCACCAATC TGGTGACGGG GCAGACCGGC
CTCGGCAACA GCATCGTCAA TCTGACGGCG GGAGCCGTGA CCAATCCGGG CGGCACGCTG
GGGTCGCTGG GCTCGATCAC GAACGGCCTG AACATCGGTT GGTTGCACAA CATGTTCGGC
GTGCAGGGTT TGGGCGCCTT GCTGCAGTTC TTCGCGGGCT CGAGCGACGC AAACGTGCTG
TCGACGCCGA ACCTCGTCAC GCTGGACAAT GAGGAGGCGA AGATCGTGGT CGGCCAGAAC
GTGCCGATTC CGACGGGCTC GTACTCGAAC CTGACGAGCG GCACGACCGC CAACGCGTTC
AACACATACG ACCGGCGCGA TGTCGGCCTG ACGCTGCACG TGAAGCCGCA AATCACCGAG
GGCGGCATTC TGAAGCTGCA GCTGTACACG GAAGATTCCG CGGTGGTGCC CGGCACGAAC
ACGACGTCGG CCAATTCGCC CGGGCCGACG TTCACGAAGC GCTCGATCCA GTCGACGGTG
CTGGCGGACA ACGGCGAGAT CATCGTGCTC GGCGGGTTGA TGCAGGATAA CTACCAGGTA
TCGAATACGA AGGTGCCGCT CCTCGGCGAC ATTCCGTGGA TCGGCCAGCT GTTCCGCTCC
GAGGGCAAGA CGCGCCAGAA GACGAACCTG ATGGTGTTCC TGCGCCCCGT GATCATCAAC
GACCGCGAGA CCGCGCAGGC GGTGACCTCG AACCGCTACG ACTACATCCA GGGCGTGACG
GGCGCGTACA AGTCGGACAA CAACGTCATT CGCGACAAGG ACGACCCGAT CGTCCCGCCG
ATGCCGCTCG GCCCGAGCCA GGGCGGCTCG CCCGCGATGA ACCTGTTCGA CCTCGACAAG
ATGCGGCGCC AGCAGCTCGC TCCGCCCGCG CCCGCCAGCG CGCCGGCGGC GGCGAGCGAC
GCCGGCACCG CGTCGCCGGG AGCCCGTCCG TGA
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| Protein sequence | MRRVATALVV AGIVAAQAAH AQVTLNFVNA DIDQVAKAIG AATGKTIIVD PRVKGQLNLV
AERPVPEDQA LKTLQSALRM QGFALVQDHG VLKVVPEADA KLQGVPTYIG NAPQARGDQV
VTQVFELRNE SANNLLPVLR PLISPNNTIT AYPANNTIVV TDYADNVRRI AQIIAGVDSA
AGSQVAVVPL KNANAIDIAA QLTKLLDPGA IGNTDATLKV TVQADPRTNA LLLRASNAQR
LAAAKKIAQQ LDAPSGVPGN MHVVPLRNAE AVKLAKTLRG MLGKGGGESG SSASSNDANA
FNQGGSQSGS NFSTGASGTP PLPSGLSSNS SGGAGGTTGG GGLGNAGLLG GDKDKGDDNQ
PGGMIQADAA SNSLIITASD PVYRNLRAVI DQLDARRAQV YIEALVVELQ ATTSANLGIQ
WQVANNALYA GTNLVTGQTG LGNSIVNLTA GAVTNPGGTL GSLGSITNGL NIGWLHNMFG
VQGLGALLQF FAGSSDANVL STPNLVTLDN EEAKIVVGQN VPIPTGSYSN LTSGTTANAF
NTYDRRDVGL TLHVKPQITE GGILKLQLYT EDSAVVPGTN TTSANSPGPT FTKRSIQSTV
LADNGEIIVL GGLMQDNYQV SNTKVPLLGD IPWIGQLFRS EGKTRQKTNL MVFLRPVIIN
DRETAQAVTS NRYDYIQGVT GAYKSDNNVI RDKDDPIVPP MPLGPSQGGS PAMNLFDLDK
MRRQQLAPPA PASAPAAASD AGTASPGARP
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