| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4974 |
|---|
| Symbol | |
|---|
| ID | 3679083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 6256177 |
|---|
| End bp | 6257445 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637720332 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_325466 |
|---|
| Protein GI | 75911170 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACG AGTTTTATAA CCAGGGACTG GAAAAAGCTA AACAAAGAGA CTACGCTGGA
GCCATTGAGG AATTTAGCCG TGCTTTAAAA CTTACTCCTT ATTTTGCGGA AGCTTATTTA
CAAAGGGGTT TAGCATATTA TGACTCAGGA GCAATCCTTT TGGCTGTGTC AGATTACACT
GAAGTTATCA GGATAAACCC TGAAAGTGTG GAAGCATATT ACTGTCGATC ATTAGCACGG
CTAGCTCTGA AAAATTTACC AGGGGCGCTG GAAGATGTAG AACAGGCGAT TCGGCTAAAT
ATTAATTATG CTGCGGCTCA TCACTTACGG GGGACAGTGC GGCGCAAACA GGGATACATT
CAAGATGCGA TCGCTAGTTT TAAACAAGCT GCGGAATTAT ACCTACAGCA GAAAGACCAG
GAAAATTGTC GTCTGTGTCT AGAGAAAATT AAACAGTTAC AGCCACCGAA ACAATCCACC
ATACAGCCAA CAAAGTCTCC CATTGCACCC ATCACATCTG TGAACGAATA TTTTACCCAG
CTATTAGACA AAGCCGAACA GGGAGACACC AGAGAAGCCA TAGCCGATTT AAACTGGATA
TTACAAGCCG ATCCTCAAGA TGCTCAAGCC TATTGCTGTC GGGGAGTGGT ACGGTGCAAA
ATGGGAAATT ATCGAGAAGC GATCGCCGAT TTTAACCAAG CATTACAATT AAACTTTCAA
GATGCAGTCG TTTACCGTAA CCGAGGTAAA GCACGTTCTC TATTAGGTGA TCATCGAGGT
GCGATCGCCG ATTTTAATCA AGCCATTCAA ATACAGCCAG AAGACACCTT AGGTTATGTT
GCCAGAGGAA ATACCTATCG TGCAATGGGT AATTATCTGG GTGCTATTCA AGACTATGGC
AAAGCGTTGC AGATTAACCC CCATGATGCC CAAGCTTACT ACAATCGCGG CATAGCTTAC
ACTTTTCTCG AAGAAATGCA AAACGCCGTT GAAGACTATC AACGTGCAGC CAGTATCTTT
TGTGAACAAC AAGACTGGGA AAATTACCAA CTAACCCAAG ATAGCCTCAA ACAAATTCAG
ACATCTATTC CCGAATATAA ACAACAAAAG TCGAATGTGC TGCGTCAAAA ACTCCTGCGG
TTGGTTGGTG GGTATTGGGA AATTGCTCAA AGATTAATTC AGCAGCAAAA AGATTACCAA
CCAGGGATGT CGGAAGAATG GTATATGCAG AAAGTGATTG ATGATTTAGA ACGCGATCGT
GGCAGATAA
|
|---|
| Protein sequence | MNNEFYNQGL EKAKQRDYAG AIEEFSRALK LTPYFAEAYL QRGLAYYDSG AILLAVSDYT
EVIRINPESV EAYYCRSLAR LALKNLPGAL EDVEQAIRLN INYAAAHHLR GTVRRKQGYI
QDAIASFKQA AELYLQQKDQ ENCRLCLEKI KQLQPPKQST IQPTKSPIAP ITSVNEYFTQ
LLDKAEQGDT REAIADLNWI LQADPQDAQA YCCRGVVRCK MGNYREAIAD FNQALQLNFQ
DAVVYRNRGK ARSLLGDHRG AIADFNQAIQ IQPEDTLGYV ARGNTYRAMG NYLGAIQDYG
KALQINPHDA QAYYNRGIAY TFLEEMQNAV EDYQRAASIF CEQQDWENYQ LTQDSLKQIQ
TSIPEYKQQK SNVLRQKLLR LVGGYWEIAQ RLIQQQKDYQ PGMSEEWYMQ KVIDDLERDR
GR
|
|---|
| |