| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4736 |
|---|
| Symbol | |
|---|
| ID | 3679716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 5940320 |
|---|
| End bp | 5941852 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637720092 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_325228 |
|---|
| Protein GI | 75910932 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00012] ribosomal protein L29
[TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.325985 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.292104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGATA CCAATCCTGC TTCGTGTTCA TCATCGGAAG AAACTTTAGA GATTGTTGCC
TCCTCTGTTG AACAAAATAA AACTCCTAAA AGCTCTTTGA GGTTTTCTTG GGGATTATGC
CTAAGTAGCC TACTCTTGTT GGGATTAGGT TTTTGGCTGG GTTCAATTCG TCAAACAGTA
GAACCCATTA GTTCCGCAAT GGCAGAAAAT CAACATTTAC TGCCTGTGGA AGTAGATAAT
CTAGTTGCTG CCAGTTCCTA TCAGCAGTCT CATACCTATA CCGGAGAAAT TGTTGCCCAA
AATACTAGTA ATTTAGGATT TGAACGGGCT GGTAAAGTTG TCCAACTTGC GGTAGAAGCA
GGACAATGGG TGAGTGCAGG CACTCCCTTA GCCCGTTTAG ATACTAGTCA GTTGATGGCA
CAAAAGCAAG AGTTATTGGC TCAAAAGCAA CAGGCGCTGT TCCAATTGAG AGAGTTACAA
GCCGGGCCCA GGGCAGAAAC CATTGATACA GCAAGAGCTA GACTGGCGCA AGAACGGGCG
CTACTCAAGG AAATGCAATC AGGGCCTCGG ATACAAACGA TCGCCGCCGC ACGGGCTAAT
GTCAATAATT TACAGGAACA ATTGGAATTA GCCCACGGTA AAAGTAAGCG ACGAGAAGCC
CTCTATAATC AAGGGGCGAT CGCTCGTGAA CAATTTGACG AAGCGATTAC CGATGTTAAT
AGTCAACAAG CGAGGGTAAA ACAAGCCCAA AGTCAACTGG ATGAATTATT AGCCGGAACT
CGCTCAGAGG TGATTACTGC TCAACAAGCC AGGGTAAAAC AAGCCCAAAG TCAACTGGAT
GAATTATTAG CTGGAACTCG TTCAGAAGTG ATTGAGGCTC AACAAGCTGC GCTAAAACAA
TTACAAAGCC GTCTAACCAG TTTAGAACTG GATTTAGAAA AAAGTGTTCT CAAGGCTCCT
TTTTCTGGTA AGGTTTCTCA ACGCTATCTT GATTTAGGTA CAGCCGTTTC TAGTGGACAA
GCGATCGCCC GTCTAGTTCA AGTAGAACAG GTAAAAGCCC ATGTAGGCAT TCCTGCATCC
CTCACCTCTC AAATCAAAAT CGGGGAAGTT CAATCAATAC AGGTAGGCCA AAAATCCTAT
CGGGCAAAGG TTACTTCCTT TTTACCAGAA CTAGACAAAG CCACTCGTAC CATAACTGTA
GTTTTAAAAT TGGAAGATGC TGCCAGTAAA ACTTTAACAG CCGGGCAAAT CGTCAATTGG
CAACTAGGAC AAAAGATATC AGCTTCCGGT TATTGGCTGC CAACAACAGC ATTAGTACGT
GGTATACGGG GGTTGTGGTC TGTTTATATT TTAGGAACAG TTCCTGGAGG CTTTCAAGTA
GAACGTCAGG ATGTGGAAGT TCTTTATACT GACGGGGAAC GGGTTTTGGT ACGGGGAACC
CTAGAAGGTA ATGAACAAAT TATTACTAAT GGCACAAATC GGCTGGTTCC CGGCCAAAAA
GTACGTCCTA TCTCCTTAGG GAGTTCCAAT TAA
|
|---|
| Protein sequence | MQDTNPASCS SSEETLEIVA SSVEQNKTPK SSLRFSWGLC LSSLLLLGLG FWLGSIRQTV
EPISSAMAEN QHLLPVEVDN LVAASSYQQS HTYTGEIVAQ NTSNLGFERA GKVVQLAVEA
GQWVSAGTPL ARLDTSQLMA QKQELLAQKQ QALFQLRELQ AGPRAETIDT ARARLAQERA
LLKEMQSGPR IQTIAAARAN VNNLQEQLEL AHGKSKRREA LYNQGAIARE QFDEAITDVN
SQQARVKQAQ SQLDELLAGT RSEVITAQQA RVKQAQSQLD ELLAGTRSEV IEAQQAALKQ
LQSRLTSLEL DLEKSVLKAP FSGKVSQRYL DLGTAVSSGQ AIARLVQVEQ VKAHVGIPAS
LTSQIKIGEV QSIQVGQKSY RAKVTSFLPE LDKATRTITV VLKLEDAASK TLTAGQIVNW
QLGQKISASG YWLPTTALVR GIRGLWSVYI LGTVPGGFQV ERQDVEVLYT DGERVLVRGT
LEGNEQIITN GTNRLVPGQK VRPISLGSSN
|
|---|
| |