| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4689 |
|---|
| Symbol | |
|---|
| ID | 3679806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 5851726 |
|---|
| End bp | 5855352 |
|---|
| Gene Length | 3627 bp |
|---|
| Protein Length | 1208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637720045 |
|---|
| Product | condensin subunit Smc |
|---|
| Protein accession | YP_325181 |
|---|
| Protein GI | 75910885 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG1196] Chromosome segregation ATPases |
|---|
| TIGRFAM ID | [TIGR02169] chromosome segregation protein SMC, primarily archaeal type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCATA TTAAGCGCGT AGAACTTACC AATTTCAAAT CCTTCGGCGG TACGACCTCT
GTCCCATTGC TGTCGGGGTT CACTGTCGTA TCTGGGCCTA ATGGTTCGGG TAAGTCTAAT
ATTTTGGATG CGCTGTTGTT TTGTTTGGGA CTGGCTAGTT CTAAGGGGAT GCGAGCAGAC
CGCTTACCCG ATTTGGTTAA TAATACTCAA ACGGCGAAAA GTCGCTCGGC GGTGGAAGCT
GTGGTGACGG TGACATTTGA TTTATCTGAT TTGGTGGATG CGAGTGATCA ATTTTCATCT
GTCAGTGGTG ATGAAGAATT ATCCCAGGAT GAAGCGCCTA GTGTAAATGG GAATGGTCAC
AGAGCCACAG AATGGAGTGT AACTCGGAAA CTGCGGGTGA CCCATCAGGG TAGTTATACC
TCGAATTACT ACATCAATGG GGTTGCGGCG ACGCAGACAG AGTTACATGA GGAGTTGGAG
AGGCTGCGGA TTTACCCTGA AGGTTATAAC GTGGTGTTGC AAGGGGATGT CACCAGCATT
ATTTCCATGA AGGGGAAGGA ACGGCGGGAA ATTATTGATG AGTTGGCGGG GGTGGCGGCC
TTTGATAGGA AGATTCACCA AGCCAAGGGA ACTTTGGATG AGGTGAAGGA TAAGGAAGAT
AGTTGTCGGA TTATTGAGTC TGAGTTAACT TTACAACGCG ATCGCCTTTC CCAAGACCGA
GCGAAGGCGG AGAGGTATCA AAAGTTACGC ACGGAGTTTT TAGAAAAGCA ATGTTGGGAA
GCGGTATTAT CTTGGCGTTC CCTACAAGCA CAACAAGAGA AGTTAGTTAC AGATATTCAA
GCAGGCGATC GCCATTATGG GGAACTGACA ACTCATCTGG CAAGCTTAAA TACGGAAATT
TCTCAAAAAA CGGCTGAATT GGAACAGCTA AATGCTCATG TGAAAGCAAT GGGGGAAGAG
GAACTGCTGG CGGTACAATC TACCCTAGCT ACCCAAGAAG CGGAACGAAA GCAACTCCAG
CGTCAGCAAA CGGAGTTAGA AACGGCTTTG CAAGAAACTA CCAAACGTTT GACGCAAACT
CAGCAAGATA TCCAACAACA TCAGCAAGGT TTGGGTGAAC TGGCGCAAGC ACAGGATTTA
GAAAGACAAT CGATTGTTTA TTGTCAGCAG CAACGGGATG AAGCACAACA AGCTTTGGAA
AAGTCCCGTG AAGCCGCAGC AGAAATCGCC TCAGCCTCGG AAGCCTGGGT ACAACAACAA
ACGGCGTTAA ACCGGCAAAT TGAGGCTGTG TTGCAAACTC TGGAACCGCA ACGTACAGAA
CAGGCGCAAC TGCGGGAACG GAATCACCAG TTACAGCAGT TAATTGGGGA GCAAACAGAG
TTAATTGCTA ATTTGGAACC GCAATTGGCG GAGAAACAAG CTGATTGTGA ACGCATAGAA
ACAGAATTTA ACTCTTCTAG TGAACCCATC CAAGATTTAG CCCAAAATCT TGCAGCCACA
GAACAGGAAT TACAAATCCA GCAAGATACC CAAAAGCGGC TATTGCAAGA ACAACGAGAC
AAACAACGTC AGCTAGATAG AATTGAGGCG CAAGCACAAG CACAGCAAGA GGTACAAGGA
ACTCAAGCCA GTAAGGTGAT TATCCAGTCA GGAATGCCTG GGGTGTGCGG CTTGGTGGTA
CATTTGGGAC GGGTAGAACC CAAGTTTCAA TTAGCGTTAG AAATTGCGGC TGGGGCGCGG
CTGGGACACA TTGTGGTGGA AGATGATGGT ATAGCAGCCG CCGGGATTGA ACTACTCAAA
CAAAAACGGG CTGGGAGAGC AACGTTTTTA CCGTTAAATA AAATTCAGGC TCACAAATTT
ACCCAGGATG CAACGCTGCG TTTAGCTAAT GGTTTCATTA ACTATGCCGT GAATTTGGTA
GACTGCGATC GCCGTTATAA AGACATCTTC AATTACGTCT TTGGTAATAC AGTAGTCTTC
GCCAACTTGG AAGCAGCGCG GAAAAATCTC GGCTTATATC GCATCGTCAC CTTGGATGGG
GAACTACTAG AAACCAGTGG CGCGATGACT GGGGGAAGTA GTAACCAGCG TTCCTCCCTA
CGGTTTGGTA ACACCGAAGC CGCAGAATCA GATGAAGCCA TTGGTTTAAA ACAGCGTTTA
GCCGATATTG ATCGGATTTT AAACCGTTGT GGTGATGCGA TCGCTAATTT ATCCATCAAA
ACCAAACAAC TATCCCAAGA ACTCACCGAA ACCCGACAAG CAAGGCGAGA ACAGCAGTTA
CAGCTGGAAC AGTTACAAAA AGATATTAAA ACTTTAACAG CCCAATTAGC AGGGACGCGA
TCGCAACTCA CCCAAAACAC CGAAAAATTT ACCACAGCCC AATCTCGTCT GGAAATTCTG
GATAGGGAGT TACCAGGACA AGAAAGCCAA TTACAACAAC TACGCCATAC CCTAGCCGAG
TTAGAAGCCT CCCAAACCCC CAGCGAATGG CAACAAATTC AGGCGACAAT TAAAACCCAA
GAACAACAAA TACAACAACG GGAAACCGCC TTTAGGGAAG CCGAACAACG CCTAAAAAAT
CTGGAAAATC AACAACAGCG TTTACAAGAA CGCATCCAAG AAGCCCAACA ACGCATCACC
GAATATCAAA CCCAACAAAC CACTTCTACA GAAGCGATTC ATCGCGTCTC CCAACAAACC
ACAACCATAA ACGCACAAAT CACCCAAACC CGCGCCAAAC TCAGCGAACT AGAACAACAC
CTGGGCGTAG AAAAACAAAA ACGCGACACA ATTGAACAAG AAGTGCGGTC GCATCTCCTA
CGTCAGCAAC AATTAGAATG GGAAATCCAA AAGCTGGAAG AAACCCAACT CAAACGCCGG
GAAGACGTAA CCGCCTTACA AAGCCAGTTA CAGGAACTAA TCCCAGAACT GCCCAACCCT
TTGCCAGAAG TCCCAGACAA GGTAGACTTA GAAGAATTGC AGAAAGAATT GCGATCGCTC
TCCAAACGTC TCCAAGCAAT GGAACCTGTG AATATGCTGG CGTTGGAAGA ATACGAACGC
ACCCAAAAGC GTCTAGAAGA ACTCACACAA AAATTAGAGA CCCTAGAAGC AGAACGCACC
GAATTACTCC TCCGCATTGA AAACTTCACC ACCTTGCGCC AAATCGCCTT TAAAGAAGCC
TTCGACGCTG TAAATGAAAA TTTCCAATCC ATCTTCGCCA CCCTGTCTGA CGGCGACGGC
TACCTGCAAT TAGATAACCC AGAAGACCCC TTTAACAGTG GCTTGAACTT AGTCGCCCAC
CCCAAAGGAA AACCAGTCCA AAGACTCGCC TCCATGTCCG GTGGTGAAAA ATCCCTCACC
GCCTTAAGCT TTATCTTTGC CCTGCAACGC TATCGCCCCT CACCCTTTTA CGCCTTTGAT
GAAGTAGATA TGTTCCTCGA TGGGGCAAAC GTAGAACGAT TGTCAAGAAT GATTAAACAA
CAAGCCCAAC AGGCACAGTT CATAGTTGTG AGTTTGCGCC GTCCGATGAT AGAATCAGCC
GAACGCACAA TCGGCGTTAC TCAAGCACGA GGAGCTTATA CTCAAGTTTT GGGAATTAAG
TTATCATCCT CGAATACATC TGCTTGA
|
|---|
| Protein sequence | MVHIKRVELT NFKSFGGTTS VPLLSGFTVV SGPNGSGKSN ILDALLFCLG LASSKGMRAD
RLPDLVNNTQ TAKSRSAVEA VVTVTFDLSD LVDASDQFSS VSGDEELSQD EAPSVNGNGH
RATEWSVTRK LRVTHQGSYT SNYYINGVAA TQTELHEELE RLRIYPEGYN VVLQGDVTSI
ISMKGKERRE IIDELAGVAA FDRKIHQAKG TLDEVKDKED SCRIIESELT LQRDRLSQDR
AKAERYQKLR TEFLEKQCWE AVLSWRSLQA QQEKLVTDIQ AGDRHYGELT THLASLNTEI
SQKTAELEQL NAHVKAMGEE ELLAVQSTLA TQEAERKQLQ RQQTELETAL QETTKRLTQT
QQDIQQHQQG LGELAQAQDL ERQSIVYCQQ QRDEAQQALE KSREAAAEIA SASEAWVQQQ
TALNRQIEAV LQTLEPQRTE QAQLRERNHQ LQQLIGEQTE LIANLEPQLA EKQADCERIE
TEFNSSSEPI QDLAQNLAAT EQELQIQQDT QKRLLQEQRD KQRQLDRIEA QAQAQQEVQG
TQASKVIIQS GMPGVCGLVV HLGRVEPKFQ LALEIAAGAR LGHIVVEDDG IAAAGIELLK
QKRAGRATFL PLNKIQAHKF TQDATLRLAN GFINYAVNLV DCDRRYKDIF NYVFGNTVVF
ANLEAARKNL GLYRIVTLDG ELLETSGAMT GGSSNQRSSL RFGNTEAAES DEAIGLKQRL
ADIDRILNRC GDAIANLSIK TKQLSQELTE TRQARREQQL QLEQLQKDIK TLTAQLAGTR
SQLTQNTEKF TTAQSRLEIL DRELPGQESQ LQQLRHTLAE LEASQTPSEW QQIQATIKTQ
EQQIQQRETA FREAEQRLKN LENQQQRLQE RIQEAQQRIT EYQTQQTTST EAIHRVSQQT
TTINAQITQT RAKLSELEQH LGVEKQKRDT IEQEVRSHLL RQQQLEWEIQ KLEETQLKRR
EDVTALQSQL QELIPELPNP LPEVPDKVDL EELQKELRSL SKRLQAMEPV NMLALEEYER
TQKRLEELTQ KLETLEAERT ELLLRIENFT TLRQIAFKEA FDAVNENFQS IFATLSDGDG
YLQLDNPEDP FNSGLNLVAH PKGKPVQRLA SMSGGEKSLT ALSFIFALQR YRPSPFYAFD
EVDMFLDGAN VERLSRMIKQ QAQQAQFIVV SLRRPMIESA ERTIGVTQAR GAYTQVLGIK
LSSSNTSA
|
|---|
| |